| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,395,404 – 27,395,465 |
| Length | 61 |
| Max. P | 0.527419 |
| Location | 27,395,404 – 27,395,465 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 71.82 |
| Shannon entropy | 0.49897 |
| G+C content | 0.59604 |
| Mean single sequence MFE | -11.77 |
| Consensus MFE | -6.74 |
| Energy contribution | -7.02 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27395404 61 - 27905053 GCAAGCCAUCCUCUAUUCCCCAGCCUCCGUGUUCCCUCU---UCAAGAUGCGGCUAGGCCAAAG ......................(((((((((((......---....)))))))..))))..... ( -10.80, z-score = -0.47, R) >droEre2.scaffold_4820 9889428 64 + 10470090 GCAAGCCAUCCUCUGCUUCUCAGCCUCCAUUUCCCCUCUUCCUCCUGAUGCGGCUGGGCCAAAA ..((((........))))(((((((..((((...............)))).)))))))...... ( -12.96, z-score = -0.29, R) >droYak2.chr3R 28330384 61 - 28832112 GCAGACCAUCCACUUCUUCUCGGCCUCCGUAUCCCCUCU---UCACGAUGCGGCUAGGCCAAAA .....................((((((((((((......---....)))))))..))))).... ( -17.90, z-score = -3.39, R) >droSec1.super_31 55882 57 - 568655 GCAAGCCCUCCUCUCUCCUCCACCCUCCGUGUUCCCUCU-AGCCGCAUCUUGGCUAGG------ ....................(((.....)))......((-(((((.....))))))).------ ( -10.10, z-score = -1.58, R) >droSim1.chr3R 27031273 61 - 27517382 GCAAGCCCUCCUCUCUCCUCCACCCUCCGUGUUCCCCCU---UCAAGAUGCGGCUAGGCCAAAG .......................((((((((((......---....)))))))..)))...... ( -7.10, z-score = 0.71, R) >consensus GCAAGCCAUCCUCUCUUCCCCAGCCUCCGUGUUCCCUCU___UCAAGAUGCGGCUAGGCCAAAA ......................(((((((((((.............)))))))..))))..... ( -6.74 = -7.02 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:02 2011