| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,380,246 – 27,380,337 |
| Length | 91 |
| Max. P | 0.886363 |
| Location | 27,380,246 – 27,380,337 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.06 |
| Shannon entropy | 0.35651 |
| G+C content | 0.53538 |
| Mean single sequence MFE | -35.44 |
| Consensus MFE | -18.53 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27380246 91 - 27905053 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG-CCAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUGGCUCAGCACC----------- ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(.(((((.(--(....)).))))).)...----------- ( -35.00, z-score = -2.17, R) >droEre2.scaffold_4820 9873727 91 + 10470090 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG-CCAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUGGCUCAGCACC----------- ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(.(((((.(--(....)).))))).)...----------- ( -35.00, z-score = -2.17, R) >droYak2.chr3R 28315210 91 - 28832112 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG-CCAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUGGCUCAGCACC----------- ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(.(((((.(--(....)).))))).)...----------- ( -35.00, z-score = -2.17, R) >droSec1.super_31 40879 91 - 568655 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG-CUAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUGGCUCAGCACC----------- ((((((---(.....((((((((...)))))))).)))))))(-((......(-----------((((........))))).((((.(--(....)).)))))))...----------- ( -32.90, z-score = -1.79, R) >droSim1.chr3R 27016202 91 - 27517382 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG-CCAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUGGCUCAGCACC----------- ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(.(((((.(--(....)).))))).)...----------- ( -35.00, z-score = -2.17, R) >droAna3.scaffold_13340 16516614 91 - 23697760 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG-CCAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUUGCUCAGCACC----------- ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(.(((((((--(....)))))))).)...----------- ( -36.70, z-score = -3.00, R) >dp4.chr2 4630136 90 - 30794189 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUCUUGGCCAGG-CCAUUACUU-----------UUCGGAAAUGUACGAGGUGAGCGA--CUGCAGUUGCUCACCGC------------ ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(((((((((--(....))))))))))..------------ ( -41.90, z-score = -5.26, R) >droPer1.super_19 328810 90 - 1869541 UCGGCU---GCUGGCCAGUGAUAAAUUAUCACUCUUGGCCAGG-CCAUUACUU-----------UUCGGACAUGGACGAGGUGAGCCA--CUGCAGUUGCUCACCGC------------ ..(((.---.(((((((((((((...))))))...))))))))-)).......-----------.(((........)))(((((((.(--(....)).)))))))..------------ ( -38.10, z-score = -3.73, R) >droWil1.scaffold_181130 13527957 101 + 16660200 CCGGCCAGAGCUGGCCAGUGAUAAAUUAUCACUGCUGGCUCAGUCCAUUAGUUUGCUCUCUUUUUUCGGAAAUGUACGAGGCGAGCGAGUUAGGAGUUGCC------------------ ..(((..((((..((.(((((((...)))))))))..))))..(((..((..((((((.((....(((........))))).))))))..)))))...)))------------------ ( -37.90, z-score = -2.76, R) >droVir3.scaffold_13047 6421397 94 + 19223366 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCU-GG-CCAUUAGUU-----------UUCGGAAAUGUACGAGGUGAGCAA----AAA----GCCGCAGUGG-CCGCGUGCA .((((.---.(((..((((((((...))))))))..((((-.(-((((.....-----------((((........))))))).))..----..)----))).)))..)-)))...... ( -35.60, z-score = -1.68, R) >droMoj3.scaffold_6540 29039267 98 - 34148556 CCGGCU---GCUGGCCAGUGAUAAAUUAUCACUGUUGGCU-GG-CCAUUAGUU-----------UUCGGAAAUGUACGAGGUGAGCAA----AAAGCUGGCCACAGUGGCCCGCGUGC- ...((.---((..((.(((((((...)))))))))..)).-((-(((((....-----------.(((........)))(((.(((..----...))).)))..))))))).))....- ( -38.30, z-score = -2.08, R) >droGri2.scaffold_15074 1906288 89 - 7742996 CCGGCU---GCCGGCCAGUGAUAAAUUAACACUGUUGGCUCGG-CCAUUAGUU---------UAUUCGGAAAUGUACGAGGUGUACGC----GAAAAUGCUCAACG------------- ..((((---((((((.((((.........))))))))))..))-))...(((.---------..((((....(((((.....))))))----)))...))).....------------- ( -23.90, z-score = -0.33, R) >consensus CCGGCU___GCUGGCCAGUGAUAAAUUAUCACUGUUGGCCGGG_CCAUUACUU___________UUCGGAAAUGUACGAGGUGAGCGA__CUGCAGUUGCUCAGCACC___________ ((((((...((..((.(((((((...)))))))))..))..)).))...................(((........)))))...................................... (-18.53 = -18.63 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:00 2011