| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,377,872 – 27,377,970 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 27,377,872 – 27,377,970 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.57 |
| Shannon entropy | 0.42530 |
| G+C content | 0.44404 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -13.68 |
| Energy contribution | -13.75 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 27377872 98 - 27905053 CAGUUUCCCAAGGGGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCGGCAACAUCAUCAUCCAUUGC--------------------- ...((((((....))))))((((((......(((((....))))).(((....))).....))))))(.((((((..(....)..)))))).).....--------------------- ( -30.10, z-score = -2.52, R) >droSim1.chr3R 27013797 98 - 27517382 CAGUUUCCCAAGGGGAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCGGCAACAUCAUCAUCCAUUGC--------------------- ...((((((...)))))).((((((......(((((....))))).(((....))).....))))))(.((((((..(....)..)))))).).....--------------------- ( -28.60, z-score = -2.22, R) >droSec1.super_31 38493 98 - 568655 CAGUUUCCCAAGGGGAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCGGCAACAUCAUCAUCCAUUGC--------------------- ...((((((...)))))).((((((......(((((....))))).(((....))).....))))))(.((((((..(....)..)))))).).....--------------------- ( -28.60, z-score = -2.22, R) >droYak2.chr3R 28312873 98 - 28832112 CAGUUUCCCAAGGGGAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGCGAAUGGUGGCGGCAACAUCAUCAUCCACUGC--------------------- (((((((((...)))))...(((((......(((((....))))).(((....))).....))))).(.((((((..(....)..)))))).))))).--------------------- ( -27.90, z-score = -1.77, R) >droEre2.scaffold_4820 9871456 98 + 10470090 CAGUUUCCCAGGGGCAAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGCGAAUGGUGGCGGCAACAUCAUCAUCCAUUGC--------------------- .............((((...(((((......(((((....))))).(((....))).....))))).(.((((((..(....)..)))))).).))))--------------------- ( -23.90, z-score = -0.15, R) >droAna3.scaffold_13340 16514004 89 - 23697760 UAGUUU------GGGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGU---GGCAACAUCAUCAUCCCCAGC--------------------- ....((------(((((..((((((......(((((....))))).(((....))).....))))))((.((((---(....))))))).))))))).--------------------- ( -33.30, z-score = -4.84, R) >dp4.chr2 4626832 94 - 30794189 CAAUUC------GUGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCAGCCACAUCAUCAUCACCAGCAA------------------- ....((------((.....))))........(((((....))))).(((....)))......(((((((((((((.......))))))..))).))))..------------------- ( -24.50, z-score = -1.31, R) >droPer1.super_19 325488 94 - 1869541 CAAUUC------GUGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCAGCCACAUCAUCAUCACCAGCAA------------------- ....((------((.....))))........(((((....))))).(((....)))......(((((((((((((.......))))))..))).))))..------------------- ( -24.50, z-score = -1.31, R) >droWil1.scaffold_181130 13525339 81 + 16660200 CAUUU-------CGGGCAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCAACUACAGCAG------------------------------- ..(((-------((.((((...........)))).)))))......(((....)))......((((((..((....))..))))))..------------------------------- ( -18.40, z-score = -0.68, R) >droVir3.scaffold_13047 12799393 94 - 19223366 UAAUUC--------UACAAACUGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUUGUGGCAGCGGCAGCUUGCACCCCCGCACCA----------------- ((((((--------.(((..((.........(((((....))))).(((....)))....))..)))))))))(((..((((..(......)..)))).)))----------------- ( -23.00, z-score = 0.05, R) >droMoj3.scaffold_6540 5106759 86 + 34148556 CAAUUC--------UGCAAACUGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUUGUGGCAGCGGCAG----CACCACCGC--------------------- .....(--------(((...(((((((((..(((((....))))).(((....)))..............)))))))))..))))----.........--------------------- ( -23.60, z-score = -0.52, R) >droGri2.scaffold_15074 5833647 112 + 7742996 UCGUUUC-------CUCAAAUUGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUUGUGUUAAGAGCCGCCUCAGCAUCGGCAUCAGCCCCACCACCCCACCC .......-------......((((......((((((((.......))))))))..))))..(((((((....(((((.((......)).)))))...)).))))).............. ( -22.80, z-score = -0.69, R) >consensus CAGUUU______GGGGAAAACGGUUAUAAAUUGCGUGAAAAUGCAUUACGCAAGUACAAAAGGCUGUGAAUGGUGGCAGCAACAUCAUCAUCCACUGC_____________________ ...............................(((((....))))).(((....)))......(((((........)))))....................................... (-13.68 = -13.75 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:00 2011