| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,363,749 – 27,363,847 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 27,363,749 – 27,363,847 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.44837 |
| G+C content | 0.48215 |
| Mean single sequence MFE | -32.08 |
| Consensus MFE | -10.97 |
| Energy contribution | -11.01 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 27363749 98 + 27905053 UUUAAAUGAGCAGCCAGCCAACU-AUCCGUAAAAUUUGGAAGUUGGCUA---GAAGGGUCGGGGUUUCGC---AGCGAUGGGUUUCUCAAA-CUGUUGGCAGGCAG ......((((.((((((((((((-.((((.......)))))))))))).---.....((((..(.....)---..)))).)))).))))..-(((((....))))) ( -31.90, z-score = -1.88, R) >droSim1.chr3R 26999773 98 + 27517382 UUUAAAUGAGCAGCCAGCCAACU-AUCCGUAACAUUUGGAAGUUGGCUA---GAAGGGUCGGGGAUUCGC---AGCGAUGGGUUUCUCAAA-CUGUUGGCAGGCAG .........((.(((((((((((-.((((.......)))))))))))).---.((.(((..((((..(.(---(....)).)..))))..)-)).)))))..)).. ( -34.40, z-score = -2.63, R) >droSec1.super_31 24490 98 + 568655 UUUAAAUGAGCAGCCAGACAACU-AUCCGUAACUUUUGGAAGUUGGCUA---GAAGGGUCGGGGAUUCGC---AGCGAUGGGUUUCUCAAA-CUGUUGGCAGGCAG ............(((...(((((-.((((.......)))))))))((((---(...(((..((((..(.(---(....)).)..))))..)-)).))))).))).. ( -29.20, z-score = -1.19, R) >droYak2.chr3R 28298409 94 + 28832112 UUUAAAUGAGCAGCCAGCCAACU-AUCCGUAACAUUUGGAAGUUGGCUA---GAAGGGUCGGGGUUUCAC---AGCGAUGGGUUUCUCAAA-CUGUUGGCAG---- ......((((.((((((((((((-.((((.......)))))))))))).---.....((((..(.....)---..)))).)))).))))..-(((....)))---- ( -30.00, z-score = -2.05, R) >droEre2.scaffold_4820 9854183 94 - 10470090 UUUAAAUGAGCAGCCAGCCAACU-AUCCGUAACAUUUGGAAGUUGGCUA---GAAGGGUCGGGGUUUCAC---CGCGAUGGGCUUCUCAAA-CUGUUGGCAG---- ......((((.((((((((((((-.((((.......)))))))))))).---.....((((.((.....)---).)))).)))).))))..-(((....)))---- ( -37.40, z-score = -3.72, R) >droAna3.scaffold_13340 16498298 77 + 23697760 UUUAAAUGAGCAGCCAGCUAACU-AUCC-----------AAGUUGGU------GGGGGAUGGGGUUA------AGCGAUGAGUUUCACAAA-CUGUUGGCAG---- ............((((((...((-((((-----------........------...)))))).((.(------(((.....)))).))...-..))))))..---- ( -19.70, z-score = -0.61, R) >dp4.chr2 4609961 102 + 30794189 UUUAAAUGAGCAGCAAGCCAAGUCAUGGCUACGUCUAUGGCUUUGGCUAUAGGAAGGUACUAGCUGACGGUAAGCCGAUGAGUUUCACAAAACUGUUGGCAG---- .........(((((.(((((((((((((......))))))).)))))).(((.......))))))).).....((((((.(((((....)))))))))))..---- ( -33.50, z-score = -2.16, R) >droPer1.super_19 308639 102 + 1869541 UUUAAAUGAGCAGCAAGCCAAGUCAUGGCUACGGCUAUGGCUUUGGCUAUAGGAAGGUACUAGCUGACGGUAAGCCGAUGAGUUUCACAAAACUGUUGGCAG---- .........(((((.((((((((((((((....)))))))).)))))).(((.......))))))).).....((((((.(((((....)))))))))))..---- ( -40.50, z-score = -4.17, R) >consensus UUUAAAUGAGCAGCCAGCCAACU_AUCCGUAACAUUUGGAAGUUGGCUA___GAAGGGUCGGGGUUUCGC___AGCGAUGGGUUUCUCAAA_CUGUUGGCAG____ ............(((((((((((.................))))))).............................((......))..........))))...... (-10.97 = -11.01 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:57 2011