| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,357,166 – 27,357,217 |
| Length | 51 |
| Max. P | 0.694075 |
| Location | 27,357,166 – 27,357,217 |
|---|---|
| Length | 51 |
| Sequences | 9 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 91.00 |
| Shannon entropy | 0.19632 |
| G+C content | 0.36945 |
| Mean single sequence MFE | -7.43 |
| Consensus MFE | -6.97 |
| Energy contribution | -6.69 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.694075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27357166 51 - 27905053 CUUAUAUGGCUCCAGAUCUUUGCCAUUUUCACGGACUUUUGUCAUAUCAAA- .....(((((...........))))).......(((....)))........- ( -7.80, z-score = -1.20, R) >droSim1.chr3R 26993139 51 - 27517382 CUUAUAUGGCUCCAGAUCUUUGCCAUUUUCACGGACUUUUGUCAUAUCAAA- .....(((((...........))))).......(((....)))........- ( -7.80, z-score = -1.20, R) >droSec1.super_31 17840 51 - 568655 CUUAUAUGGCUCCAGAUCUUUGCCAUUUUCACGGACUUUUGUCAUAUCAAA- .....(((((...........))))).......(((....)))........- ( -7.80, z-score = -1.20, R) >droYak2.chr3R 28291744 51 - 28832112 CUUAUAUGGCUCCAGAUCUCUGCCAUUUUCACAGACUUUUGUCAUUUCAAA- .....(((((...........))))).......(((....)))........- ( -8.00, z-score = -1.57, R) >droEre2.scaffold_4820 9847464 51 + 10470090 CUUAUAUGGCUCCAGAUCUCUGCUAUUUUUACGGACUUUUGUCAUAUCAAA- ...(((((((...(((..((((.((....))))))..))))))))))....- ( -7.30, z-score = -1.27, R) >droAna3.scaffold_13340 16491057 51 - 23697760 CUUAUAUGGCUCCAGAUCUUUGCCAUUUUCACGGACUUUUGUCAUAUCAAA- .....(((((...........))))).......(((....)))........- ( -7.80, z-score = -1.20, R) >dp4.chr2 4601448 51 - 30794189 CUUAUAUGGCUCCAGAUCUCUGCCAUUUUCACGGACUUUUGUCAUAUCAAA- ...(((((((..(((....)))((........))......)))))))....- ( -7.90, z-score = -1.17, R) >droPer1.super_19 1634397 52 + 1869541 CUUAUAUGGCUCCAGAUCUCUGCCAUUUUCACGGACUUUUGUCAUAUCGGAA ((.(((((((..(((....)))((........))......))))))).)).. ( -9.60, z-score = -0.98, R) >droWil1.scaffold_181130 13498531 51 + 16660200 CUUAUAUGGUUCAAGAUUCAAACCGUUUUCGCAAACUUUUGUCAUAUUAAA- .....((((((.........))))))....((((....)))).........- ( -2.90, z-score = 0.41, R) >consensus CUUAUAUGGCUCCAGAUCUCUGCCAUUUUCACGGACUUUUGUCAUAUCAAA_ .....(((((...........))))).......(((....)))......... ( -6.97 = -6.69 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:56 2011