| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,335,212 – 27,335,317 |
| Length | 105 |
| Max. P | 0.887542 |
| Location | 27,335,212 – 27,335,317 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.40 |
| Shannon entropy | 0.53858 |
| G+C content | 0.41159 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -11.73 |
| Energy contribution | -11.44 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27335212 105 + 27905053 ------AGAGCCGAGAGGCUGGCGAAAUUCG-CUGUAAAAAUGUUCGCUGUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGGCUUAGUGGGGCAAUAAACAAA ------..((((....))))((((.....))-)).......((((.....(((((((((.....((((((.....))))))((((....)))).)))))))))...)))).. ( -37.30, z-score = -3.20, R) >droPer1.super_19 1606317 109 - 1869541 AACUGUCUUGGCCUUGUUGUUGCGAUGUUU--UAGUUGUUUUUGUUG-CUUGCCCCACUCAAAUCACAAUUUAAUGUUGUGGGUCAGUUGCCUUAGUGGGGCAAUAAACUAA (((((....(((.((((....)))).))).--)))))......(((.-.((((((((((.....((((((.....))))))(((.....)))..))))))))))..)))... ( -31.90, z-score = -2.23, R) >dp4.chr2 4573762 109 + 30794189 AACUGUCUUGGCCUUGUUGUUGCGAUGUUU--UAGUUGUUUUUGUUG-CUUGCCCCACUCAAAUCACAAUUUAAUGUUGUGGGUCAGUUGCCUUAGUGGGGCAAUAAACUAA (((((....(((.((((....)))).))).--)))))......(((.-.((((((((((.....((((((.....))))))(((.....)))..))))))))))..)))... ( -31.90, z-score = -2.23, R) >droAna3.scaffold_13340 16466261 108 + 23697760 --GCUAGGAGGUGGGGGAUAAGCGAAAUUUG-CAGUAAAAAUGUUCG-UUUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUUGCCUUAGUGGGGCAAUAAACAAA --.....(((...((((.((((((((((((.-......)))).))))-)))))))).)))...(((((((.....)))))))((..(((((((.....)))))))..))... ( -34.20, z-score = -2.62, R) >droEre2.scaffold_4820 9825656 105 - 10470090 ------AGAGCCGAGAGGCUGGCGAAAUUUG-CAGUAAAAAUGUUCGCUUUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGGCUUAGUGGGGCAAUAAACAAA ------..((((....))))((((((((((.-......)))).))))))((((((((((.....((((((.....))))))((((....)))).))))))))))........ ( -38.00, z-score = -3.64, R) >droYak2.chr3R 28269379 104 + 28832112 ------AGAGCCGAGAGGCUGGCGAAAUUUG-CAGUAAAAAUGUUCG-UUUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGACGGCUUAGUGGGGCAAUAAACAAA ------..((((....)))).((((...)))-)........((((..-.((((((((((.....((((((.....))))))((((....)))).))))))))))..)))).. ( -35.60, z-score = -3.27, R) >droSec1.super_4 6135106 105 + 6179234 ------AGAGCCGAGAGGCUGGCGAAAUUCG-CUGUAAAAAUGUUCGCUGUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGGCUUAGUGGGGCAAUAAACAAA ------..((((....))))((((.....))-)).......((((.....(((((((((.....((((((.....))))))((((....)))).)))))))))...)))).. ( -37.30, z-score = -3.20, R) >droSim1.chr3R 26964819 105 + 27517382 ------AGAGCCGAGAGGCUGGCGAAAUUCG-CUGUAAAAAUUUUCGCUGUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGGCUUAGUGGGGCAAUAAACAAA ------..((((....))))(((((((....-..........))))))).(((((((((.....((((((.....))))))((((....)))).)))))))))......... ( -37.54, z-score = -3.40, R) >droWil1.scaffold_181130 13475284 86 - 16660200 ---------------------AAGAUUUUCGACUUCAAAAAUGUUUG-----CUCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUUGCUUUAGUGGACCAAUAAACUAA ---------------------.......................(((-----.(((((((((.(((((((.....))))))).....)))....)))))).)))........ ( -13.30, z-score = 0.11, R) >droVir3.scaffold_13047 12749161 90 + 19223366 ------------UGGAG-GCACAGAAAUU---CAGUUAAAAUGUUUG------CCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGCUUUAGUGGGCCAAUAAACUAA ------------....(-((.........---............(((------(((((....((((.....))))...))))).)))((((....))))))).......... ( -17.50, z-score = 0.23, R) >droMoj3.scaffold_6540 5058671 100 - 34148556 ---UGCUGUGCCCGCAGCAAAUAGAAAUU---CAGUUAAAAUGUUUG------CCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGCCGCUUUAGUGGGCCAAUAAAGUGA ---((((((....)))))).........(---((.((....((((.(------((((((.....((((((.....))))))((....)).....))))))).)))))).))) ( -27.70, z-score = -1.58, R) >droGri2.scaffold_15074 5781707 84 - 7742996 -------------------CGAAGAAAUG---CAGUUAAAAUGUUUG------CCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGCUUUAGUGGGCCAAUAAACUAA -------------------..........---.((((....((((.(------((((((.....((((((.....))))))(((.....)))..))))))).)))))))).. ( -17.30, z-score = -0.69, R) >consensus ______AGAGCCGAGAGGCUGGCGAAAUUUG_CAGUAAAAAUGUUCG_UUUGCCCCACUCAAAUUACAAUUUAAUGUUGUGGGUCAGUCGCCUUAGUGGGGCAAUAAACAAA .....................................................((((((....(((((((.....)))))))............))))))............ (-11.73 = -11.44 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:51 2011