Locus 12317

Sequence ID dm3.chr3R
Location 27,328,149 – 27,328,242
Length 93
Max. P 0.683883
window16932

overview

Window 2

Location 27,328,149 – 27,328,242
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 96.77
Shannon entropy 0.05702
G+C content 0.58065
Mean single sequence MFE -31.38
Consensus MFE -30.04
Energy contribution -29.92
Covariance contribution -0.12
Combinations/Pair 1.15
Mean z-score -1.24
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.41
SVM RNA-class probability 0.683883
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 27328149 93 + 27905053
CGCCGAACGGAAGCGAGCUACCAAAACCGUUGAGCGUUGAGCCAGCGGAAGCGAUUGCCGCAUCGCCACCUGGUUCUAUAGGUGAUUCUUCUG
.......(((((((((..........((((((.((.....))))))))..(((.....))).))))((((((......))))))....))))) ( -31.50, z-score =  -1.36, R)
>droEre2.scaffold_4820 9818373 93 - 10470090
CGCCGAACGGAAGCGAGCUACCAAAACCGUUGAGCGUUGAGCCAGCGGAAGCGAUUGCCGCAUUGCCACCUGGUUCUUUGGGUGAUUCCUCUG
........((((((((..........((((((.((.....))))))))..(((.....))).))))((((..(....)..)))).)))).... ( -30.80, z-score =  -0.78, R)
>droYak2.chr3R 28261956 93 + 28832112
CGCCGAACGGAAGCGAGCUACCAAAACCGUUGAGCGUUGAGCCAGCGGAAGCGAUUGCCGCAUUGCCACCUGGUUCUUCAGGUGAUUCCUCUG
........((((((((..........((((((.((.....))))))))..(((.....))).))))(((((((....))))))).)))).... ( -33.00, z-score =  -1.69, R)
>droSec1.super_4 6128073 93 + 6179234
CGCCGAACGGAAGCGAGCUACCAAAACCGUUGAGCGUUGAGCCAGCGGAAGCGAUUGCCGCAUCGCCCCCUGGUUCUUUAGCUGAUUCCUCUG
........((((...(((((.......((.....))..(((((((.((..(((((......))))).)))))))))..)))))..)))).... ( -28.60, z-score =  -0.66, R)
>droSim1.chr3R 26957756 93 + 27517382
CGCCGAACGGAAGCGAGCUACCAAAACCGUUGAGCGUUGAGCCAGCGGAAGCGAUUGCCGCAUCGCCACCUGGUUCUUUAGGUGAUUCCUCUG
........((((((((..........((((((.((.....))))))))..(((.....))).))))(((((((....))))))).)))).... ( -33.00, z-score =  -1.72, R)
>consensus
CGCCGAACGGAAGCGAGCUACCAAAACCGUUGAGCGUUGAGCCAGCGGAAGCGAUUGCCGCAUCGCCACCUGGUUCUUUAGGUGAUUCCUCUG
........((((((((..........((((((.((.....))))))))..(((.....))).))))(((((((....))))))).)))).... (-30.04 = -29.92 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:50 2011