| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,317,389 – 27,317,481 |
| Length | 92 |
| Max. P | 0.716062 |
| Location | 27,317,389 – 27,317,481 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.94 |
| Shannon entropy | 0.27748 |
| G+C content | 0.49710 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -19.52 |
| Energy contribution | -19.64 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27317389 92 + 27905053 CGCUGAUAACUCAGGCCACCGAUUCCGUUUCCAUUUCUAUUGUACUUGGAGCGGCUUUCGGUUU--------------UGGUGGUUCUGCGGUUU-UGCAACGGACC ((.((..(((((((((((((((..(((...((..(((((.......))))).))....)))..)--------------)))))).)))).)))).-..)).)).... ( -29.70, z-score = -1.92, R) >droSim1.chr3R 26949061 86 + 27517382 CGCUGAUAACUCAGGCCACCGAUUCCGUUUCAAUUUCUAUUGUACUUGGAGCGGCAUU--------------------UGGUGGUUCUGCGGUUU-UGCAACGGACC ((.((..(((((((((((((((..(((((((((...(....)...)))))))))...)--------------------)))))).)))).)))).-..)).)).... ( -31.10, z-score = -3.24, R) >droSec1.super_4 6116803 86 + 6179234 CGCUGAUAACUCAGGCCACCGAUUCCGUUUCCAUUUCUAUUGUACUUGGAGCGGCAUU--------------------UGAUGGUUCUGCGGUUU-UGCAACGGACC ((.((..(((((((((((.(((..(((((.(((...(....)....))))))))...)--------------------)).))).)))).)))).-..)).)).... ( -22.70, z-score = -0.64, R) >droYak2.chr3R 28250451 107 + 28832112 CGCUGAUAACUCAGGCCGCCAAUUCCGUUUCCAUUUCUAUUCUAUUUGGUUUGGGGUUUGGAGUUCGAGUUUCGGUUUUGGUGGUUCUGCGGUUUCUGCAACGGACC .((.((.(((((((((((((((..(((.(((((.(((((..((....))..)))))..))))).........)))..))))))).)))).)))))).))........ ( -34.00, z-score = -2.00, R) >droEre2.scaffold_4820 9802978 88 - 10470090 CGCUGAUAACUCAGGCCACCAAUUCCGUUUCUAUUUCUAUUCUACUUGGGUCGGGGUUU-------------------UGGUGGUUCUGCGGUUUUUGCAACGGACC .((....((((((((((((((((((((..((((.............)))).))))))..-------------------)))))).)))).))))...))........ ( -25.92, z-score = -1.79, R) >consensus CGCUGAUAACUCAGGCCACCGAUUCCGUUUCCAUUUCUAUUGUACUUGGAGCGGCAUU____________________UGGUGGUUCUGCGGUUU_UGCAACGGACC .((....(((((((((((((((..(((((((................)))))))..).....................)))))).)))).))))...))........ (-19.52 = -19.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:49 2011