| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,300,914 – 27,301,011 |
| Length | 97 |
| Max. P | 0.974287 |
| Location | 27,300,914 – 27,301,011 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.10 |
| Shannon entropy | 0.38205 |
| G+C content | 0.34041 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -15.02 |
| Energy contribution | -14.73 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27300914 97 + 27905053 ----------------------AACCUUUUCGGGGUUAAAUGCGCAUUACAAACAAUUUUGUAAUGCCCAGUUAGCCAACAG-AACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAC ----------------------......(((((((((((.((.((((((((((....)))))))))).)).)))))).....-......((((((....)))))).......)))))... ( -25.00, z-score = -3.22, R) >droPer1.super_19 227428 106 + 1869541 -------------CAACCUUCUUUUCGGCUCGGGGUUAAAUGCACAUUACAAACAAUUUUGUAGUUGCCAGUUAGGCAACAG-AACUGAAAUUUGUUUUCAGAUUAUUUAACUCGAGCAG -------------..............(((((((.(((((((.....((((((....))))))((((((.....))))))..-..((((((.....))))))..)))))))))))))).. ( -33.00, z-score = -4.92, R) >dp4.chr2 4528582 106 + 30794189 -------------CAACCUUCUUUUCGGCUCGGGGUUAAAUGCACAUUACAAACAAUUUUGUAAUCCCCAGUUAGGCAACAG-AACUGAAAUUUGUUUUCAGAUUAUUUAACUCGAGCAA -------------..............((((((((..........((((((((....))))))))))))((((((....)..-..((((((.....))))))......))))).)))).. ( -26.50, z-score = -3.17, R) >droAna3.scaffold_13340 16426628 98 + 23697760 ---------------------AACCUUUUUCGGGGUUAAAUUCACAUUACAAACAAUUUUGUAAUGCCCAGUUAGGCAACAG-GACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAU ---------------------(((((......)))))...(((.(((((((((....)))))))))..(((((.(....)..-))))).((((((....)))))).........)))... ( -19.50, z-score = -1.54, R) >droEre2.scaffold_4820 9786468 96 - 10470090 ----------------------AACCUUUUCGGGGUUAAAUGCGCAUUACAAACAAUUUUGUAAUGCC-AGUUGGGCAACAG-AACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAU ----------------------(((((.....)))))..((((((((((((((....))))))))))(-((((.(....)..-))))).((((((....))))))...........)))) ( -26.30, z-score = -3.15, R) >droYak2.chr3R 28233865 97 + 28832112 ----------------------AACCUUUUCGGGGUUAAAUGCGCAUUACAAACAAUUUUGUAAUGCCCAGUUAGGCAACAG-AACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAU ----------------------(((((.....)))))..((((((((((((((....)))))))))).(((((.(....)..-))))).((((((....))))))...........)))) ( -25.50, z-score = -3.15, R) >droSec1.super_4 6100489 97 + 6179234 ----------------------AACCUUUUCGGGGUUAAAUGCGCAUUACAAACAAUUUUGUAAUGCCCAGUUAGCCAACAG-AACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAU ----------------------......(((((((((((.((.((((((((((....)))))))))).)).)))))).....-......((((((....)))))).......)))))... ( -25.00, z-score = -3.26, R) >droSim1.chr3R 26932664 97 + 27517382 ----------------------AACCUUUUCGGGGUUAAAUGCGCAUUACAAACAAUUUUGUAAUGCCCAGUUAGCCAACAG-AACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAU ----------------------......(((((((((((.((.((((((((((....)))))))))).)).)))))).....-......((((((....)))))).......)))))... ( -25.00, z-score = -3.26, R) >droWil1.scaffold_181130 13435342 118 - 16660200 GAACUUUUUAUGUUUGUAUCUUAUUUUUUUUGGGGUUAAAUGCACAUUACAAACAAUUUCGUAAUGGCCAGUUAAACAACAG-ACUUGAAAUUUGUUUUCGAAUUAUUUAAGUCGAGCA- ..........(((((...............((..(((.(((((.((((((..........))))))))..))).)))..))(-((((((((((((....)))))..)))))))))))))- ( -21.80, z-score = -1.12, R) >droVir3.scaffold_13047 12711291 99 + 19223366 -------------------GAACCUUUUUUCGGGGUUAAAUGCCUAUUACAAACAAUUUUGUAAUGGCCAGUUAAAUAACAG-CGCUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCA- -------------------((((....((((((.(((....(((.((((((((....)))))))))))..(((....)))))-).))))))...)))).....................- ( -19.40, z-score = -0.98, R) >droMoj3.scaffold_6540 5019219 99 - 34148556 -------------------GAAUCUUUUUUCGGGGUUAAAUGCCCAUUACAAACAAUUUGGUAGAGGCCAGUUGAAUAACAG-CGCUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCA- -------------------(((......))).((((.....)))).............((((....))))((((.....)))-)(((((((((((....)))))).......)).))).- ( -17.11, z-score = 0.37, R) >droGri2.scaffold_15074 5738096 102 - 7742996 -----------------GAACCUCUAUUUUUGGGGUUAAGUGCUCAUUACAAAGAAUCUUGCAAUGGUCAGUUAAAUAACAGCGGCUGUAAUUUAUUUUCAAAUUAUUUAAGUCGAGCA- -----------------.((((((.......))))))((.((..((((.(((......))).))))..)).)).........((((((((((((......)))))))...)))))....- ( -19.10, z-score = -0.63, R) >consensus ______________________AACCUUUUCGGGGUUAAAUGCGCAUUACAAACAAUUUUGUAAUGCCCAGUUAGGCAACAG_AACUGAAAUUUGUUUUCAAAUUAUUUAAGUCGAGCAU ............................((((((.((((.((.((((((((((....)))))))))).)).)))).)............((((((....)))))).......)))))... (-15.02 = -14.73 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:45 2011