| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,299,708 – 27,299,813 |
| Length | 105 |
| Max. P | 0.837734 |
| Location | 27,299,708 – 27,299,813 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 54.68 |
| Shannon entropy | 0.72622 |
| G+C content | 0.51975 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -14.68 |
| Energy contribution | -14.44 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27299708 105 - 27905053 CUGGGUGCUGGCCAUGUCAAUGCUCCCGCUCCUGGCUAGCGU------AGC----CUAGCCUCAGCCAAUCGAAUUCCAAAGAGGCAUUCACAUUUUCAAACUUCAAGUGCGACU .(((((((((((((.(.....((....)).).))))))))..------.))----)))(((((..................)))))..((.(((((.........))))).)).. ( -27.67, z-score = 0.00, R) >droSim1.chr3R 26931468 100 - 27517382 CUGGGUGCUGGCCAUGUCAAUGCUCCCGCUUCUGGCUAGCCU---------------AGCCUCAGCCAAACGAAUUCCAAAGAGGCAUUCACAUUUUCAAGCUUCAAGUGCGACU (((((.((((((...((((..((....))...))))..))).---------------))))))))......((((.((.....)).))))..........((.......)).... ( -25.50, z-score = 0.57, R) >droSec1.super_4 6099278 111 - 6179234 CUGGGUGCUGGCCAUGUCAAUGCUCCCGCUCCUGGCUAGCCUAAGCCUAGC----CUAGCCUCAGCCAAACGAAUUCCAAAGAGGCAUUCACAUUUUCAAGCUUCAAGUGCGACU ..(((.((((((...))))..)).)))(((...((((((.(((....))).----))))))..))).....((((.((.....)).))))..........((.......)).... ( -29.40, z-score = 0.47, R) >dp4.chr2 4527034 81 - 30794189 -----CGCUGCUGCUACUGAAGCUUCU-CUUUGAAGUAGCAUUCCAUCAUC------GGCAUCGGCAUCGAACAUUCGGAGGCAGCAACUACU---------------------- -----...(((((((.((((((((((.-....))))).((...((......------)).....))........))))).)))))))......---------------------- ( -24.60, z-score = -1.80, R) >droPer1.super_19 225876 87 - 1869541 -----UGCUGCUGCUACUGAAGCUCCU-CUUUGAAGUAGCAUUCCAUCAUCGGCAUUGGCAUCGGCAUCGAACAUUCGGAGGCAGCAGCAACU---------------------- -----((((((((((.((((((((.((-......)).))).........((((.....((....)).))))...))))).))))))))))...---------------------- ( -30.50, z-score = -1.93, R) >consensus CUGGGUGCUGGCCAUGUCAAUGCUCCCGCUUCUGGCUAGCAU______AGC_____UAGCCUCAGCCAAACGAAUUCCAAAGAGGCAUUCACAUUUUCAA_CUUCAAGUGCGACU ......((((((((..................))))))))..................(((((..................)))))............................. (-14.68 = -14.44 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:44 2011