| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,346,316 – 9,346,409 |
| Length | 93 |
| Max. P | 0.780939 |
| Location | 9,346,316 – 9,346,409 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.25 |
| Shannon entropy | 0.26541 |
| G+C content | 0.51920 |
| Mean single sequence MFE | -14.32 |
| Consensus MFE | -14.59 |
| Energy contribution | -14.03 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.63 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9346316 93 - 23011544 -----------------CCACACCACGCCAUCACCCAGUUGCACAUCCACUCGAAACAUCCU-CCGGCAGUCGCGCUUUUAGUUUUGCUCGCUCGGAGUUUCGUUCAUUAG -----------------.........((.((......)).)).........((((((.(((.-.((((((..((.......)).)))).))...)))))))))........ ( -15.30, z-score = -0.30, R) >droYak2.chr2L 12016832 107 - 22324452 CCACAUCCUACCACCAUCCAUACCACUCCA-CAUC--AUCACCCAUCCAUUCGAAACAACCU-CCGGCAGUCGCGCUUUUAGUUUUGCUUGCUUGGUGUUUCGUUCAUUAG ..............................-....--..............(((((((.((.-..((((((.(.((.....)).).)).)))).)))))))))........ ( -14.20, z-score = -1.43, R) >droSec1.super_3 4804317 94 - 7220098 -----------------CCACACCACACCAUCACCCAGCUGCACAUCCACUCGAAACAUCCUCCCGGCAGUCGCGCUUUUAGUUUUGCUUGCUCGGAGUUUCGUUCAUUAG -----------------..................................((((((.(((..(.(((((..((.......)).))))).)...)))))))))........ ( -13.90, z-score = 0.01, R) >droSim1.chr2L 9123763 94 - 22036055 -----------------CCACACCACACCAUCACCCAGCUGCACAUCCACUCGAAACAUCCUCCCAGCAGUCGCGCUUUUAGUUUUGCUUGCUCGGAGUUUCGUUCAUUAG -----------------..................................((((((.(((..(.(((((..((.......)).))))).)...)))))))))........ ( -13.90, z-score = -0.78, R) >consensus _________________CCACACCACACCAUCACCCAGCUGCACAUCCACUCGAAACAUCCU_CCGGCAGUCGCGCUUUUAGUUUUGCUUGCUCGGAGUUUCGUUCAUUAG ...................................................((((((.(((..(.(((((..((.......)).))))).)...)))))))))........ (-14.59 = -14.03 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:01 2011