| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,244,911 – 27,245,008 |
| Length | 97 |
| Max. P | 0.791627 |
| Location | 27,244,911 – 27,245,008 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 59.05 |
| Shannon entropy | 0.79359 |
| G+C content | 0.35977 |
| Mean single sequence MFE | -21.06 |
| Consensus MFE | -6.95 |
| Energy contribution | -5.51 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27244911 97 + 27905053 CUGGAAAAUGGAACAAAUGCACAAGCUAUUUGUAUUUGUGCAGCCAGCAAAUGC--AAAUAGUCGAC---UGCAGAUGAA-AAUCUCAAUCAUUUAAAUCAAU---- .....((((((......((((...(((((((((((((((.......))))))))--)))))))....---))))(((...-.)))....))))))........---- ( -26.10, z-score = -2.87, R) >droEre2.scaffold_4820 9728037 91 - 10470090 CUGGAAAAUGGAACAAAUGCACAAACUAUUU------GUGUAGCCAGCAAAUGC--AAAUAGUCGGG---UGCAGAUGAA-AAUUUCAAUCACUUCAGCCAAU---- .(((....((((.....(((((..(((((((------((((.........))))--)))))))...)---))))(((((.-....)).)))..)))).)))..---- ( -22.30, z-score = -1.78, R) >droYak2.chr3R 28171514 91 + 28832112 CUGGAAAAUGGAACAAAUGCACAAGCUAUUU------GUGCAGCCAGCGAAUGC--AAAUAGUCGGU---UGCAGAUGAA-AAUUUCAAUCACUUCAGCCAAU---- .(((....((((((((((((....)).))))------))((((((.((......--.....)).)))---))).(((((.-....)).)))..)))).)))..---- ( -21.00, z-score = -0.62, R) >droSec1.super_4 6044947 100 + 6179234 CUGGAAAAUGGAACAAAUGCACAAAUUAUUUGUAUUUGUGCAGCCAGCAAGUGC--AAAUAGUCGGCGGCUGCAGAUGAA-AAUCUCAAUCAUGUCGAUCAAU---- ........(((......(((((((((.......))))))))).)))((....))--.....(((((((..((.((((...-.))))))....)))))))....---- ( -25.80, z-score = -1.32, R) >droSim1.chr3R 26875164 100 + 27517382 CUGGAAAAUGGAACAAAUGCACAAACUAUUUGUAUUUGUGCAGCCAGCAAGUGC--AAAUAGUCGGCGGCUGCAGAUGAA-AAUCUCAAUCAUGUCGAUCAAU---- ........(((..............((((((((((((((.......))))))))--))))))((((((..((.((((...-.))))))....)))))))))..---- ( -26.40, z-score = -1.50, R) >droVir3.scaffold_13047 12643924 105 + 19223366 AGAAAAAGAAAACAAACACAUAGAAAUGUGAAAAUAUUUGCAAAAUGUUGUAAG--AAUUUUGUAAAUACACGGAAUAAACAAAUGCAAUUGUAUCCAUAUAUCGCU ................(((((....)))))....((((((((((((........--.))))))))))))...(((....((((......)))).))).......... ( -16.00, z-score = -1.43, R) >droMoj3.scaffold_6540 4955561 84 - 34148556 ACGAAAAGUAGCCAAGUUAAUAAAAAUAUUUUUGCCAAUGUGCGCUGCGAAAACUAGAAUAUUGAAAUGGAUUGAAUUGA-AAUC---------------------- .(((.......(((..((((((......(((((((...........)))))))......))))))..)))......))).-....---------------------- ( -9.82, z-score = 0.33, R) >consensus CUGGAAAAUGGAACAAAUGCACAAACUAUUUGUAUUUGUGCAGCCAGCAAAUGC__AAAUAGUCGGC___UGCAGAUGAA_AAUCUCAAUCAUUUCAAUCAAU____ .............((..((((...(((((((.......(((.....))).......))))))).......))))..))............................. ( -6.95 = -5.51 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:37 2011