| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,238,742 – 27,238,832 |
| Length | 90 |
| Max. P | 0.589052 |
| Location | 27,238,742 – 27,238,832 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 59.72 |
| Shannon entropy | 0.72994 |
| G+C content | 0.54839 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -8.38 |
| Energy contribution | -6.35 |
| Covariance contribution | -2.03 |
| Combinations/Pair | 2.07 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27238742 90 + 27905053 ---------ACUUAACAGCCAAGCCGACUCAA---CUCU-UCUUCAAACCGACUGACGGC-------UGGCCUCCUG--GCCAACAGGUCAGAAUUCGUGAGUCUCCUCGGG ---------.........((.((..((((((.---....-...((.....))(((((.(.-------(((((....)--)))).)..)))))......))))))..)).)). ( -27.20, z-score = -1.65, R) >droSim1.chr3R 26874155 90 + 27517382 ---------ACUUAACAGCCAAGCCGGCUCAA---CUCA-UCUUCAAGCCAACUGACGGC-------UGGCCUCCUG--GCCAACAGGUCAGAAUUCGUGAGUCUCCUCGGG ---------.........((.((..((((((.---((..-......))....(((((.(.-------(((((....)--)))).)..)))))......))))))..)).)). ( -25.70, z-score = -0.61, R) >droSec1.super_4 6043923 90 + 6179234 ---------ACUUAACAGCCAAGCCGGCUCAA---CUCA-UCUUCAAGCCAACUGACGGC-------UGGCCUCCUG--GCCAACAGGUCAGAAUUCGUGAGUCUCCUCGGG ---------.........((.((..((((((.---((..-......))....(((((.(.-------(((((....)--)))).)..)))))......))))))..)).)). ( -25.70, z-score = -0.61, R) >droYak2.chr3R 28170378 96 + 28832112 ---------ACUUAACAGCCAAGCCGGCUCAA---CUCU-UCUUUGGAU-GACUGACGACGGAUGGUUGGUCUGCUU--GCCAACAGGUCACAAUUCGUGGGUCUCUUUGGG ---------.......((((.....))))...---....-.((..(((.-((((.((((..(((.((((((......--))))))..))).....)))).)))))))..)). ( -28.40, z-score = -0.69, R) >droEre2.scaffold_4820 9727006 92 - 10470090 ---------ACUUAACAGCCAAGCCGGCUCAA---GUCU-UCUUCGGAC-GACUGACGGCUG----UUGGCCUCCUG--GCCAACAGGUCACAAUUCGUGAGUCUCCUGGGG ---------.........((.((..(((((((---(((.-((....)).-))))(((..(((----((((((....)--)))))))))))........))))))..)).)). ( -38.10, z-score = -2.99, R) >dp4.chr2 4440045 86 + 30794189 ---------ACUUAACGGCCU--CCGGCUCUG---UCCGGUCCUCGUCUGUCCUGUCCUC-------GGGCUUGCUGCAGUCGACAGGUCAGAUUUCAUGAGCCUUC----- ---------.......(((..--((((.....---.)))).....(((((.((((((..(-------..((.....)).)..)))))).))))).......)))...----- ( -29.60, z-score = -1.74, R) >droPer1.super_19 142558 86 + 1869541 ---------ACUUAACGGCCU--CCGGCUCUG---UCCGGUCCCCGUCUGUCCUGUCCUC-------GGGCUUGCUGCAGUCGACAGGUCAGAUUUCAUGAGCCUUC----- ---------.((((.(((...--((((.....---.))))...)))((((.((((((..(-------..((.....)).)..)))))).)))).....)))).....----- ( -30.10, z-score = -1.78, R) >droGri2.scaffold_15116 1276397 109 - 1808639 GCGACUAAGUCCAGGCGGACUCCACAAAUUUAAGCUCUUAUCCUUGGAAGAUAGAAUGGUAGGAGUCCAUUUUUUUA---AUGACAAAAUAUGUCUUACGCAUUAGUCGGUG .(((((((......(((((((((((...((((...((((........))))))))...)).))))))).........---..((((.....))))....)).)))))))... ( -29.00, z-score = -2.04, R) >consensus _________ACUUAACAGCCAAGCCGGCUCAA___CUCU_UCUUCGAACCAACUGACGGC_______UGGCCUCCUG__GCCAACAGGUCAGAAUUCGUGAGUCUCCUCGGG .........................(((((.............(((.......)))............(((((..((....))..))))).........)))))........ ( -8.38 = -6.35 + -2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:36 2011