| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,235,179 – 27,235,288 |
| Length | 109 |
| Max. P | 0.764758 |
| Location | 27,235,179 – 27,235,288 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 67.40 |
| Shannon entropy | 0.66808 |
| G+C content | 0.49732 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -11.60 |
| Energy contribution | -13.13 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27235179 109 - 27905053 --UCCCUCUCUUCGACUACCGUUGGCGAAUUUUAUUUAUCUCCUGCUCCUUCCUCUUCGUUUCAUUUGGCCAAGUCGCUGUUGCCAAGGCGCUAAACUUGGCCGAGACGCA- --......((.(((((....))))).)).............................((((((....((((((((((((........))))....))))))))))))))..- ( -26.00, z-score = -1.13, R) >droSim1.chr3R 26870596 109 - 27517382 --UUCCAAUCUUCGACUACCGUUGGCGAAUUUCAUUUGGCUCCUGCUCCUUCCUCUUCGUUUCAUUUGGCCAACUCGCUGUUGCCAAGGCUCCAAACUUGGCCGAGACGCA- --..........((((....))))(((((........(((....)))........)))(((((..(((((.(((.....))))))))((((........))))))))))).- ( -26.39, z-score = -0.91, R) >droSec1.super_4 6040373 109 - 6179234 --UUCCAAUCUUCGACUACCGUUGGCGAAUUUCAUUUGGCUCCUGCUCCUUCCUCUUCGUUUCAUUUGGCCAAGCCGCUGUUGCCAAGGCUCCAAACUUGGCCGAGACGCA- --..........((((....))))(((((........(((....)))........)))(((((....(((((((....((..((....))..))..)))))))))))))).- ( -26.39, z-score = -0.24, R) >droYak2.chr3R 28166734 100 - 28832112 --UUUCUUCCUUCGACUACCGUUGGCGAAUUUCAUUUG---------CCGUCCUUUUCGUCUCAUUUGGCCAAGUCGCUGUUGCCAAGGCGCAAAACUUGGCCGAGACGAA- --.....................(((((((...)))))---------))......((((((((....((((((((...(((.((....)))))..))))))))))))))))- ( -34.30, z-score = -3.19, R) >droEre2.scaffold_4820 9723350 109 + 10470090 --UUCCUUUCUUCGACUACCGUUGGCGAAUUCCAUUUGGCUCCUGCACCGCCCUUUUCGUUUCGUUUGGCCAAGUCGCUGUUGCCAAGGCGCCAAACUUGGCCGAGACGAA- --..........((((....))))(((((.........((....)).........)))))(((((((((((((((((((........))))....)))))))).)))))))- ( -32.17, z-score = -1.03, R) >droAna3.scaffold_13340 5117470 105 - 23697760 -----UGCUUUAGGGCGACUCUUAACCGACUGCCUCUGUUGGCAGCUCCGCCCUUUUCAUUUCAUUUGGCCGAGU--CUGUUGCCAAGUCGCCAAACUUGGCCGCCACGGCA -----.(((....((((((((......(((((((......))))).)).(((...............))).))))--)....(((((((......))))))).)))..))). ( -36.86, z-score = -2.04, R) >droGri2.scaffold_15074 5649710 98 + 7742996 GCUGUUCUUUCUCCUUUAUUUUUUGCAUAAAAUGACUGUAG---AUUAUUUGUUGUUGAGUUUAAGCCUUAUUUUUUCUGUUGCCAGGUC-CGUAACUUGGU---------- (((...(((........((..((((((.........)))))---)..))........)))....)))...............(((((((.-....)))))))---------- ( -13.89, z-score = -0.04, R) >consensus __UUCCUUUCUUCGACUACCGUUGGCGAAUUUCAUUUGGCUCCUGCUCCUUCCUCUUCGUUUCAUUUGGCCAAGUCGCUGUUGCCAAGGCGCCAAACUUGGCCGAGACGCA_ .........................................................((((((....(((......)))...((((((........)))))).))))))... (-11.60 = -13.13 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:34 2011