| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,216,556 – 27,216,647 |
| Length | 91 |
| Max. P | 0.947005 |
| Location | 27,216,556 – 27,216,647 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.20 |
| Shannon entropy | 0.25049 |
| G+C content | 0.38216 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -20.37 |
| Energy contribution | -21.93 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27216556 91 - 27905053 -------------CCUCGUA-AUCCUGGGCCUUGCUUCAACUUAAGACUUACAUGUGUAUAUAAAAAUAUAUAUAUGGUAUAUAUCGUAUAGUCGCCCAGGAGCU -------------.......-.((((((((.(((...))).....((((..(((((((((((....)))))))))))((((.....))))))))))))))))... ( -27.10, z-score = -3.52, R) >droSim1.chr3R 26851959 104 - 27517382 CUCGUAAUCCUAUCCUCGUA-AUCCUGGGCCUUGCUUCAACUUAAGACUUACAUGUGUAUAUAAAAAUAUAUAUAUGGUAUAUAUCGUAUAGUCGCCCAGGAGCU ....................-.((((((((.(((...))).....((((..(((((((((((....)))))))))))((((.....))))))))))))))))... ( -27.10, z-score = -3.03, R) >droYak2.chr3R 28147713 100 - 28832112 -----CUCGUUAUCCUACUGCGCACUGGACCUGGCUUCAACUUAAGAGUUACGUGUGUAUAUAAAAAUAUAUAUAUGGUAUAUAUCGUAUAGUCGCCCAGAAGCU -----.........((.(((.((((((.((.((((((........))))))(((((((((((....))))))))))).........)).)))).)).))).)).. ( -20.60, z-score = -0.09, R) >droEre2.scaffold_4820 9704677 100 + 10470090 -----CUCGUAAUCCUACUGCGCACUGGGCCUGGCUUCAACUUAAGAGUUACAUGUGUAUAUAAAAAUAUAUAUAUGGUAUAUAUCGUAUAGUCGCCCAGAAGCU -----..............((...((((((..((((.(((((....)))).(((((((((((....))))))))))).........)...))))))))))..)). ( -26.40, z-score = -1.87, R) >consensus _____CUCGUUAUCCUACUA_ACACUGGGCCUGGCUUCAACUUAAGACUUACAUGUGUAUAUAAAAAUAUAUAUAUGGUAUAUAUCGUAUAGUCGCCCAGAAGCU ......................((((((((..((((...((..........(((((((((((....))))))))))).........))..))))))))))))... (-20.37 = -21.93 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:32 2011