| Sequence ID | dm3.chr2L |
|---|---|
| Location | 841,207 – 841,299 |
| Length | 92 |
| Max. P | 0.936409 |
| Location | 841,207 – 841,299 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.73 |
| Shannon entropy | 0.26485 |
| G+C content | 0.40979 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -19.80 |
| Energy contribution | -21.97 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 841207 92 + 23011544 UAAAUA--UGUAUUAACUUAAGUACGAACCUUUGAGUUCGUGUAA----------------GCCUAGAAGUGGGAAACACCCGAACCAUCAAUCUAGAGGGGAUAUAUAU ...(((--((((((..((....(((((((......)))))))...----------------..(((((...(((.....)))((....))..)))))))..))))))))) ( -23.00, z-score = -2.18, R) >droSim1.chr2L 840112 107 + 22036055 UAAAUAAAUGUACUAACUUAAGUACGAACCUUUGAGUUCGUGUGAACCGCGGCGAAAAGUCGCCUCGAAGUGGGGAACACCCUAACCUUCAAU---GAGGGAAUAAAUAU ........((((((......))))))...((((((((((....))))...(((((....)))))))))))(((((....))))).(((((...---)))))......... ( -29.40, z-score = -2.48, R) >droSec1.super_14 811864 107 + 2068291 AAAAUAAGUGUACUAACUUAAGUACGAACCUUUGAGUUCGUGUGAACCGCGGCGAAAAGUCGCCUCGAAGUGGGGAACACCCUAACCUUCAAU---GAGGGAAUAAAUAC ....(((((......)))))..(((((((......))))))).....((.(((((....))))).))...(((((....))))).(((((...---)))))......... ( -30.10, z-score = -2.32, R) >consensus UAAAUAA_UGUACUAACUUAAGUACGAACCUUUGAGUUCGUGUGAACCGCGGCGAAAAGUCGCCUCGAAGUGGGGAACACCCUAACCUUCAAU___GAGGGAAUAAAUAU ...............((((...(((((((......))))))).....((.(((((....))))).))))))(((.....)))...(((((......)))))......... (-19.80 = -21.97 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:06 2011