| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,200,096 – 27,200,159 |
| Length | 63 |
| Max. P | 0.905907 |
| Location | 27,200,096 – 27,200,159 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 66.24 |
| Shannon entropy | 0.68699 |
| G+C content | 0.50380 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -7.37 |
| Energy contribution | -7.54 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27200096 63 + 27905053 GUUCUCUGCAAUAUAAAUUUCCGCGCUUUAUGGCGGUUCAAAUGCCGGCGGAGAAACUGAAUC .((((((((...........((((........))))...........))))))))........ ( -18.75, z-score = -2.22, R) >droSim1.chr3R 26834402 63 + 27517382 GUUCUCUGCAAUAUAAAUUUCCGCGCUUUAUGGCGGCUCAAAUGACGGCGGAGAAGCCGAGUC .((((((((...........((((........))))...........))))))))........ ( -18.05, z-score = -0.87, R) >droSec1.super_4 6005390 62 + 6179234 -GUCUCUGCAAUAUAAAUUUCCGCGCUUUAUGGCGGCUCAAAUGCCGGCGGAGAGGCCGAGUC -..(((.((........((((((((((....)))(((......))).))))))).)).))).. ( -22.80, z-score = -1.88, R) >droYak2.chr3R 28131007 63 + 28832112 GUUCUCUGCAAUAUAAAUUUCCGCGCUUCGUGGCGGUUCAAAUGCCGGCGGAGAAAGCACAUC .((((((((...........(((((...)))))((((......))))))))))))........ ( -21.80, z-score = -2.76, R) >droEre2.scaffold_4820 9686859 63 - 10470090 GCUCGCUCAAAUAUAAAUUUCCGCGCUUUGCGGCCGUUCAAAUGCCGGCGGGGAAGCCGAAUC .....................((.(((((.(.((((.........)))).).))))))).... ( -17.10, z-score = 0.46, R) >droAna3.scaffold_13340 5080384 55 + 23697760 GUUUCCACGAAUAUAAAUUUCCGCGCUUUAUAGCCGUUCAAAUACCCGCACAAAC-------- ((((..(((..((((((.........))))))..)))..))))............-------- ( -4.00, z-score = -0.28, R) >anoGam1.chrU 26385052 53 + 59568033 CUUCUCCUCCCCAUGGUGUUUUUCGCAAUGUGAUCCCGUAGGAGAACGCGAAC---------- .(((((((....((((.(....((((...)))).)))))))))))).......---------- ( -12.30, z-score = -1.00, R) >consensus GUUCUCUGCAAUAUAAAUUUCCGCGCUUUAUGGCGGUUCAAAUGCCGGCGGAGAAGCCGAAUC .................((((((((((....))).((......))..)))))))......... ( -7.37 = -7.54 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:31 2011