| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,190,389 – 27,190,490 |
| Length | 101 |
| Max. P | 0.957056 |
| Location | 27,190,389 – 27,190,490 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.13 |
| Shannon entropy | 0.45587 |
| G+C content | 0.29330 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -10.65 |
| Energy contribution | -11.88 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957056 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 27190389 101 + 27905053 ------AAUAAAAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAAUG-UACAAAGUGA-GAAACAAAGGGAAA-CUUAA ------...............((((((((......))))))))...((((((((((((........))).))))))))-).........-.......(((....-))).. ( -22.10, z-score = -2.95, R) >droSim1.chr3R 26824726 101 + 27517382 ------CAUAAAAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAAUG-UACAAAGUGA-GAAACAAAGGGAAA-CUUUA ------(((............((((((((......))))))))...((((((((((((........))).))))))))-).....))).-......((((....-)))). ( -23.50, z-score = -3.22, R) >droSec1.super_4 5995693 101 + 6179234 ------CAUAAAAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAAUG-UACAAAGUGA-GAAACAAAGGGAAA-CUUUA ------(((............((((((((......))))))))...((((((((((((........))).))))))))-).....))).-......((((....-)))). ( -23.50, z-score = -3.22, R) >droYak2.chr3R 28120833 107 + 28832112 CAUAAAAAUAGAAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAAUG-UACAAAGUGA-GUAACAAAGGGAAA-CUUUA (((....(((....)))....((((((((......))))))))...((((((((((((........))).))))))))-).....))).-......((((....-)))). ( -23.50, z-score = -3.04, R) >droEre2.scaffold_4820 9676905 101 - 10470090 ------CAUAAAAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAACG-UACAAAGUGA-GAAACAAAGGGAAA-CUUUA ------(((..(((.(((...((((((((......))))))))....))).)))..)))(((....(((((.....))-)))....)))-......((((....-)))). ( -22.40, z-score = -2.89, R) >droAna3.scaffold_13340 5069001 98 + 23697760 -----------AAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAAUG-UAAAAAAAGCUGAAACAAAAGAAAAACUUUA -----------..........((((((((......))))))))...((((((((((((........))).))))))))-).............................. ( -19.10, z-score = -2.29, R) >droMoj3.scaffold_6540 4898694 89 - 34148556 ---------AAUAUUUUUGCACUGGCGAUUGAUUUAUGAGCAGAAAACAAUUUACGAC-UCAAAUAGUGCGGAAAAUGUUGGAAAAAAGUUUGUUUUAC----------- ---------(((((((((((((((....((((.(..((((..(....)..))))..).-)))).)))))).)))))))))...................----------- ( -14.00, z-score = -0.05, R) >droGri2.scaffold_14830 5741813 97 - 6267026 -AAUAAGCAAAUAUUUUUGCAUUGGCAAUUGAUUCAUGAGCAGAAAACAAUUUGUGAC-UCAAAUAGUGCGGAAAAUGCUGUAAAAAAGUUUAUUUAAC----------- -....((((....(((((((((((....((((.(((..((..(....)..))..))).-)))).))))))))))).))))...................----------- ( -18.30, z-score = -0.48, R) >consensus ______CAUAAAAAUAUGAAAUUGCCAAUUGAUUUAUUGGCAGAAAACAUUUUUCCAUGUCAAAUAGUGCGGAAAAUG_UACAAAGUGA_GAAACAAAGGGAAA_CUUUA .....................((((((((......))))))))....(((((((((((........))).))))))))................................ (-10.65 = -11.88 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:30 2011