| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,182,204 – 27,182,311 |
| Length | 107 |
| Max. P | 0.603606 |
| Location | 27,182,204 – 27,182,311 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.87 |
| Shannon entropy | 0.37157 |
| G+C content | 0.46589 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -12.85 |
| Energy contribution | -12.85 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27182204 107 - 27905053 CCUCAUCCUCAUCCGCAUCCCCAUCUGC-AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCGAUGGCGUAAACUUGAUCUAUG .............((((((.((((((((-((.....)))))))).((((......(((((....)))))..))))........)).))).)))............... ( -25.10, z-score = -1.83, R) >droSim1.chr3R 26817023 107 - 27517382 CCUCAUCCACAUCCACAUCCCCAUCCGC-AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCGAUGGCGUAAACUUGAUCUAUG .........................(((-.((.(.((((((....((((......(((((....)))))..))))....)))))).))).)))............... ( -20.70, z-score = -0.86, R) >droSec1.super_4 5987312 107 - 6179234 CCUCAUUCACAUCCACAUCCCCAUCCGC-AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCGAUGGCGUAAACUUGAUCUAUG .........................(((-.((.(.((((((....((((......(((((....)))))..))))....)))))).))).)))............... ( -20.70, z-score = -0.86, R) >droAna3.scaffold_13340 5059993 106 - 23697760 UUUUGUAUAUGUUU-CUUGUUUGCCUGCCAGCCUUCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGGCCAUGCA-GCGAUGGCGUAAACUUGAUCUAUG .......((((..(-(..((((((..((((....(((((((...(((((......(((((....)))))..)))))...))))-).))))))))))))..))..)))) ( -31.00, z-score = -3.26, R) >dp4.chr2 4375804 90 - 30794189 -------------C-CUUGUGC-CUUGCAAGGCCUCCU--AGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUCCA-GCGAUGGCGUAAAGUUGAUCUAUG -------------(-(((((..-...)))))).....(--(((((.(((......(((((....))))).....(.(((((..-..)))))).....))))))))).. ( -23.50, z-score = -2.09, R) >droPer1.super_19 79648 90 - 1869541 -------------C-CUUGCGC-CUUGCAAGGCCUCCU--AGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUCCA-GCGAUGGCGUAAAGUUGAUCUAUG -------------(-(((((..-...)))))).....(--(((((.(((......(((((....))))).....(.(((((..-..)))))).....))))))))).. ( -24.80, z-score = -2.49, R) >consensus CCUCAU_CACAUCC_CAUCCCCACCUGC_AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCA_GCGAUGGCGUAAACUUGAUCUAUG ........................................(((((((((......(((((....)))))..)))).((((.......)))).........)))))... (-12.85 = -12.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:24 2011