| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,179,826 – 27,179,919 |
| Length | 93 |
| Max. P | 0.991434 |
| Location | 27,179,826 – 27,179,919 |
|---|---|
| Length | 93 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.12 |
| Shannon entropy | 0.55730 |
| G+C content | 0.51098 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -14.00 |
| Energy contribution | -14.57 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27179826 93 + 27905053 GCCUAUAUCCACCCCCAUCUCACUCA------GUCGUCGGCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGACCGCCGUCUUU .........................(------((((..((..(((((((((....))))))))).))..)))))...((((((......)))))).... ( -21.90, z-score = -2.30, R) >droSim1.chr3R 26814652 93 + 27517382 GCCCAUAUCCACCCCCUUCUCACUCA------GUCGUCGGCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGACCGCCGUCUUU .........................(------((((..((..(((((((((....))))))))).))..)))))...((((((......)))))).... ( -21.90, z-score = -2.42, R) >droSec1.super_4 5984932 92 + 6179234 GCCCAUAUCCACCCCCUUUU-ACUCA------GUCGUCGGCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGACCGCCGUCUUU ....................-....(------((((..((..(((((((((....))))))))).))..)))))...((((((......)))))).... ( -21.90, z-score = -2.54, R) >droEre2.scaffold_4820 9664373 73 - 10470090 ---------------------GCCUA-----UAUCCACCCCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGACCGCCGUCUUU ---------------------.....-----...........(((((((((....))))))))).............((((((......)))))).... ( -16.70, z-score = -2.81, R) >droYak2.chr3R 28109247 99 + 28832112 GCCUAUAUCCACCCCCUUCUCACGCACUCCUUGUCGCCGCCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGACCGCCGUCUUU ...............................((.((((((..(((((((((....)))))))))......(.....))))))).))(((....)))... ( -20.60, z-score = -2.28, R) >droAna3.scaffold_13340 5057560 98 + 23697760 GGAUAUUGCCACCCCUUUCC-ACUCGGGCUCACUCGUCGCCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGGCCGCCGUCUUU (((..............)))-....((((.........))))(((((((((....)))))))))......(((....(((((.....))))).)))... ( -26.64, z-score = -1.34, R) >dp4.chr2 4373216 91 + 30794189 --------CGCCCCACCUUCCACCUCAUCGCUAUCGUUGCCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGGCAGCCGUCUUU --------.....................(((..((((((..(((((((((....)))))))))......(.....)))))))...))).......... ( -16.90, z-score = -0.09, R) >droPer1.super_19 77075 91 + 1869541 --------CGCCCCACCUUCCACCUUAUCUCUAUCGUUGCCCUUGUGUUUUUUUAUAGACACAAAUCAUUGACUAUAGCGGCGCCAGGCAGCCGUCUUU --------.........................(((.((...((((((((......))))))))..)).))).....(((((........))))).... ( -16.40, z-score = -1.03, R) >droWil1.scaffold_181108 3215912 99 + 4707319 ACCUCACCCUUCAACUCUCUCACCCUUUGCCUUCAACUGCCCCAGUGUUUGUUUAUAGACACAAAUCAUUAACUAAAGCGGCGCCAGGUCGUCAUUUUC (((((.(((((.................((........))....(((((((....))))))).............))).)).)..)))).......... ( -10.80, z-score = 0.36, R) >consensus GCCUAUAUCCACCCCCUUCUCACCCA_____UGUCGUCGCCCUUGUGUUUGUUUAUAGACACAAAUCAUUGACUAUCGCGGCGCCAGACCGCCGUCUUU ..........................................(((((((((....))))))))).............((((((......)))))).... (-14.00 = -14.57 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:24 2011