| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,175,970 – 27,176,060 |
| Length | 90 |
| Max. P | 0.760184 |
| Location | 27,175,970 – 27,176,060 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.86 |
| Shannon entropy | 0.50441 |
| G+C content | 0.50785 |
| Mean single sequence MFE | -30.86 |
| Consensus MFE | -13.20 |
| Energy contribution | -14.20 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27175970 90 - 27905053 AAACUUAAUGGCUGGCAAGUGUGAGCACAC--UGGGAUUCCGGGAGUGAGAAC-UCGGUGUAACUGCCAGUUUGCUCGCAACUCCGAGCACAA------------- .........((((((((.((....((((.(--(((....))))((((....))-)).)))).))))))))))((((((......))))))...------------- ( -32.90, z-score = -1.97, R) >droSim1.chr3R 26810850 90 - 27517382 AAACUUAAUGGCUGGCAAGUGUGAACACAC--UGGGAUUCCGGGAGUGAGAAC-UCGGUGUAACUGCCAGUUGGCUCGCAACUCCGAGCACAA------------- .........((((((((.((....((((.(--(((....))))((((....))-)).)))).)))))))))).(((((......)))))....------------- ( -32.60, z-score = -2.12, R) >droSec1.super_4 5981160 90 - 6179234 AAACUUAAUGGCUGGCAAGUGUGAACACAC--UGGGAUUCCGGGAGUGAGAAC-UCGGUGUAACUGCCAGUUGGCUCGCAACUCCGAGCACAA------------- .........((((((((.((....((((.(--(((....))))((((....))-)).)))).)))))))))).(((((......)))))....------------- ( -32.60, z-score = -2.12, R) >droEre2.scaffold_4820 9660536 90 + 10470090 AAACUUAAUGGCUGGCAAGUGUGAACACAC--UGGGAUUCCGGGAGUGGGAAC-UCGGUGUAACUGCCAGUUUGCUCGGAAUUCCGUGCUGAA------------- .........((((((((.(((....)((((--((((.(((((....))))).)-))))))).)))))))))).((.(((....))).))....------------- ( -34.00, z-score = -2.84, R) >droYak2.chr3R 28105070 90 - 28832112 AAACUUAAUGGCUGGCAAGUGUGAACACAC--UGGGAUUCCGGGAGUGAGAAC-UCGGUGUAACUGCCAGUUUGCUCGCAACUUCGAGCUGAA------------- .........((((((((.((....((((.(--(((....))))((((....))-)).)))).)))))))))).(((((......)))))....------------- ( -31.30, z-score = -2.22, R) >droAna3.scaffold_13340 5053553 72 - 23697760 AAACUUAAUGGCUGGCAAGUGUGAACAAAC--UUGGCUU---------GGGAC-UCGGC----CUGCCA-----CUUGCUUUUUUGAGUUGAA------------- .(((((((.....((((((((....)....--..(((..---------(((..-....)----))))))-----))))))...)))))))...------------- ( -20.20, z-score = -1.27, R) >droWil1.scaffold_181108 3209829 106 - 4707319 AAACUUAAUGGCUGGCAAGUGUGAACAAGCCGUAGAGCAAGAGGACUUGGAACAUCAACUUUGCCUCUACUCCUGGUCCCGGUCCGGAUCAAGGCCUCGGAGUUAG .(((((...(((((((...((....)).)))...(((..(((((.(..((........))..)))))).))).((((((......)))))).))))...))))).. ( -32.40, z-score = -0.47, R) >consensus AAACUUAAUGGCUGGCAAGUGUGAACACAC__UGGGAUUCCGGGAGUGAGAAC_UCGGUGUAACUGCCAGUUUGCUCGCAACUCCGAGCACAA_____________ .........((((((((.(((....))).........((((....).)))..............)))))))).(((((......)))))................. (-13.20 = -14.20 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:23 2011