| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,164,236 – 27,164,292 |
| Length | 56 |
| Max. P | 0.777688 |
| Location | 27,164,236 – 27,164,292 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 89.46 |
| Shannon entropy | 0.19207 |
| G+C content | 0.42299 |
| Mean single sequence MFE | -11.20 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27164236 56 + 27905053 CCCUGAAACCGAACAUGGCAAUGAAUAAGUUUAUUGCCGCGCAAAUUGCUUUCCAU ....((((........(((((((((....)))))))))..((.....))))))... ( -12.30, z-score = -1.92, R) >droAna3.scaffold_13340 5041223 56 + 23697760 CCUUAAUACCGAACUUGGCAAUUAAUCAGUUUAUGGCCAACCGAAUUGCUUCCCAU .........((...(((((...(((.....)))..))))).))............. ( -6.60, z-score = -0.03, R) >droSim1.chr3R 26798746 56 + 27517382 CCCUGAAACCGAACAUGGCAAUAAAUAAGUUUAUUGCCGCGCAAAUUGCUUUCCAU ....((((........(((((((((....)))))))))..((.....))))))... ( -12.20, z-score = -2.21, R) >droSec1.super_4 5969503 56 + 6179234 CCCUGAAACCGAACAUGGCAAUGAAUAAGUUUAUUGCCGCGCAAAUUGCUUUCCAU ....((((........(((((((((....)))))))))..((.....))))))... ( -12.30, z-score = -1.92, R) >droEre2.scaffold_4820 9648973 55 - 10470090 -CCCGAAACCGAACAUGGCAAUGAAUAAGUUUAUUGCCGCGCAAAUUGCUUUCCAU -...((((........(((((((((....)))))))))..((.....))))))... ( -12.60, z-score = -1.94, R) >consensus CCCUGAAACCGAACAUGGCAAUGAAUAAGUUUAUUGCCGCGCAAAUUGCUUUCCAU ...............((((((((((....))))))))))................. ( -9.68 = -9.80 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:22 2011