| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,153,460 – 27,153,529 |
| Length | 69 |
| Max. P | 0.729661 |
| Location | 27,153,460 – 27,153,529 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 84.52 |
| Shannon entropy | 0.28342 |
| G+C content | 0.46864 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -15.54 |
| Energy contribution | -15.22 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27153460 69 - 27905053 -CCUAGAGCCCAAGUCAUAAUCA------------AGUGUACGUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAGC -..((((((....(((((.....------------.))).)))))))).((((.(((((((.....))))))).)))).... ( -17.80, z-score = -1.74, R) >droSim1.chr3R 26793089 81 - 27517382 -CCUAGAGUCCAAGUCAUAAUCAAUCCCCACGCUUAGUGUACUUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAAC -...........................(((.....)))..........((((.(((((((.....))))))).)))).... ( -17.10, z-score = -1.12, R) >droSec1.super_4 5963848 81 - 6179234 -CCUAGAGCCCAAGUCAUAAUCAAUCCCCACGCUUAGUGUACUUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAAC -...........................(((.....)))..........((((.(((((((.....))))))).)))).... ( -17.10, z-score = -1.07, R) >droYak2.chr3R 28087118 80 - 28832112 -CCUAGAGCCCAAGUGAUAAUCAAACCCCUCGUCUAGUGUACUUUUUAAUUGGUCAGCUGGACG-GUCGGCUGUCCAAAGGC -((((.((((....((.....))......(((((((((..(((........)))..))))))))-)..)))).)....))). ( -19.50, z-score = -0.36, R) >droEre2.scaffold_4820 9643275 82 + 10470090 CCCAAAAGCCCAAGUGAUAAUCAAACCCCAAACUUAGGGUACUUUUUAAUUGGUCAGCUGGACAUGUCAGCUGUCCAGAAAC .......((((((((................)))).)))).........((((.(((((((.....))))))).)))).... ( -22.79, z-score = -2.59, R) >consensus _CCUAGAGCCCAAGUCAUAAUCAAACCCCACGCUUAGUGUACUUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAAC .................................................((((.(((((((.....))))))).)))).... (-15.54 = -15.22 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:21 2011