| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,337,553 – 9,337,610 |
| Length | 57 |
| Max. P | 0.856050 |
| Location | 9,337,553 – 9,337,610 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 71.58 |
| Shannon entropy | 0.54836 |
| G+C content | 0.48413 |
| Mean single sequence MFE | -15.97 |
| Consensus MFE | -9.02 |
| Energy contribution | -9.47 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.856050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9337553 57 - 23011544 CAGAACGCUUUUCGAGAGGAAAGGGCGGAAGCGAGAGCUUGAUGCUGGUAAUUCUAA .((((..((((((....))))))((((.((((....))))..)))).....)))).. ( -18.60, z-score = -2.44, R) >droSim1.chr2L 9114788 57 - 22036055 CAGAACGCUUUUCAAGCGGAAAGGGCGGAAGCGAGAGCUUGAUGCUGGAAAUUCUAA .((((((((.....)))).....((((.((((....))))..)))).....)))).. ( -16.20, z-score = -1.23, R) >droSec1.super_3 4795358 57 - 7220098 CAGAACGCUUUUCGAGCGGAAAGGGCGGAAGCGAGAGCUUGAUGCUGGUAAUUCUAA .(((((((((...))))).....((((.((((....))))..)))).....)))).. ( -16.60, z-score = -1.09, R) >droYak2.chr2L 12007582 57 - 22324452 CAGAACACUUUUCGAGCGGAAAGGGCGGAAGCGAGAGCUUGAUGCUGCUGAUUCCAA (((....((((((....))))))((((.((((....))))..)))).)))....... ( -17.10, z-score = -1.04, R) >droEre2.scaffold_4929 9947834 56 - 26641161 -CAAGCGCUUUUCGAGAGCAAAGGGCGGAAGCGGGCGCUUGAUGGUGGUACUUCUAG -(((((((((..(....)......((....)))))))))))................ ( -17.10, z-score = -0.69, R) >droWil1.scaffold_180708 424406 57 - 12563649 CGGAGUAAUUUCCAUGGGGUUAAUAUUAAAGAAAAUACCUUUAUUGGCUACAUUUGA .((((....))))(((..(((((((...(((.......))))))))))..))).... ( -10.20, z-score = -0.87, R) >consensus CAGAACGCUUUUCGAGCGGAAAGGGCGGAAGCGAGAGCUUGAUGCUGGUAAUUCUAA .......((((((....))))))((((.((((....))))..))))........... ( -9.02 = -9.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:59 2011