| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,145,570 – 27,145,620 |
| Length | 50 |
| Max. P | 0.713786 |
| Location | 27,145,570 – 27,145,620 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 85.73 |
| Shannon entropy | 0.25533 |
| G+C content | 0.58137 |
| Mean single sequence MFE | -16.75 |
| Consensus MFE | -13.83 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27145570 50 + 27905053 CAUAGAGGCAAC-UGCUCCGGUUUGGCGACAAGCAUACUGGAACGAGUGCC------ ......((((..-((.((((((...((.....))..)))))).))..))))------ ( -18.10, z-score = -2.66, R) >droSim1.chr3R 26784787 50 + 27517382 CAUGGAGGCAAC-UGCUCCGGUUUGGCGACAAGCAUACUGGAACGAGUGCC------ ......((((..-((.((((((...((.....))..)))))).))..))))------ ( -18.10, z-score = -2.27, R) >droSec1.super_4 5956033 50 + 6179234 CAUGGAGGCAAC-UGCUCCGGUUUGGCGACAAGCAUACUGGAACGAGUGCC------ ......((((..-((.((((((...((.....))..)))))).))..))))------ ( -18.10, z-score = -2.27, R) >droYak2.chr3R 28079005 50 + 28832112 CAUGGAGGCAGC-UGCUCCGGUUUGGCGACAAGCAUACUGGAACGAGUGCC------ ......((((..-((.((((((...((.....))..)))))).))..))))------ ( -17.60, z-score = -1.54, R) >droEre2.scaffold_4820 9635278 50 - 10470090 CAUGGAGGCAGC-UGCUCCGGUUUGGCGACAAGCAUACUGGAACGAGUGCU------ ......((((..-((.((((((...((.....))..)))))).))..))))------ ( -16.00, z-score = -0.98, R) >droAna3.scaffold_13340 5027395 51 + 23697760 ------GGCAGCCUGCUCCGCUUUGGCGACAAGCAUACUGGGGCGAGUAAGAGUGUU ------....((.((((((((((.(....))))).....)))))).))......... ( -12.60, z-score = 1.22, R) >consensus CAUGGAGGCAAC_UGCUCCGGUUUGGCGACAAGCAUACUGGAACGAGUGCC______ ......(((.((.((.((((((...((.....))..)))))).)).)))))...... (-13.83 = -14.00 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:19 2011