| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,128,851 – 27,128,903 |
| Length | 52 |
| Max. P | 0.958249 |
| Location | 27,128,851 – 27,128,903 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 98.72 |
| Shannon entropy | 0.01766 |
| G+C content | 0.48718 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27128851 52 + 27905053 UCCAUGCUGGUGGUGCUCAUGGUGCUCAUAGUGCUAUCGGUCCUUCUAUAUC .....((((((((..((.(((.....)))))..))))))))........... ( -15.10, z-score = -1.74, R) >droSim1.chr3R 26768069 52 + 27517382 UCCAUGCUGGUGGUGCUCAUGGUGCUCAUAGUGCUAUCGGUCCUUUUAUAUC .....((((((((..((.(((.....)))))..))))))))........... ( -15.10, z-score = -1.92, R) >droSec1.super_4 5939368 52 + 6179234 UCCAUGCUGGUGGUGCUCAUGGUGCUCAUAGUGCUAUCGGUCCUUUUAUAUC .....((((((((..((.(((.....)))))..))))))))........... ( -15.10, z-score = -1.92, R) >consensus UCCAUGCUGGUGGUGCUCAUGGUGCUCAUAGUGCUAUCGGUCCUUUUAUAUC .....((((((((..((.(((.....)))))..))))))))........... (-15.10 = -15.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:17 2011