| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,078,035 – 27,078,125 |
| Length | 90 |
| Max. P | 0.931211 |
| Location | 27,078,035 – 27,078,125 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 59.61 |
| Shannon entropy | 0.74683 |
| G+C content | 0.52304 |
| Mean single sequence MFE | -24.74 |
| Consensus MFE | -12.31 |
| Energy contribution | -11.83 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.83 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27078035 90 - 27905053 --UAUCCCUC---CAAUAGUGUGACCCAUAGGUAGCCUGGGGUCAU--CC-AAACAGACCUCGAC--CCCCAGUGACUGUAAAACCGCGUGGCUGCCUUA----- --........---................((((((((.((((((..--..-...........)))--)))..(((..........)))..))))))))..----- ( -24.76, z-score = -1.00, R) >droSim1.chr3R 26721873 92 - 27517382 UAUAUCCCUC---CAAUAGUGUGACCCACAGGUAAACUGGGGUCAU--CC-AAACAGACCUCGAC--CCCCAGUGACUGCAAAACCGCGUGGCUGGCUUA----- ..........---.....(..((((((.(((.....))))))))).--.)-..............--..(((((.((.((......)))).)))))....----- ( -27.60, z-score = -1.51, R) >droSec1.super_4 5895461 90 - 6179234 --UAUCCCUC---CAAUAGUGUGACCCACAGGUAAACUGGGGUCAU--CC-AAACAGACCUCGAC--CCCCAGUGACUGCAAAACCGCGUGGCUGGCUUA----- --........---.....(..((((((.(((.....))))))))).--.)-..............--..(((((.((.((......)))).)))))....----- ( -27.60, z-score = -1.52, R) >droEre2.scaffold_4820 9568502 91 + 10470090 --UAUCCCGC---AAGUAGUGUGACCCACAGGCAAACUGGGGUCAU--CCAAAACAGACCUCGAC--CUCCAGUGACUGCAAAACCGCAUUGCUGCUUCA----- --......((---(.((((((((.....(((....(((((((((..--..............)))--).)))))..)))......)))))))))))....----- ( -27.99, z-score = -2.28, R) >droYak2.chr3R 28014801 93 - 28832112 --UAGCCCGCAAAAAAUAGUGUGACCCACAGGUAAACUGGGGUCAU--CC-ACACAGACCUCGAC--CUCCAGUGACUGCAAAACCGCGUGGCUGCUUGA----- --((((((((........(((((((((.(((.....))))))))).--.)-)).(((.(((.(..--..).)).).))).......))).))))).....----- ( -30.50, z-score = -2.17, R) >droAna3.scaffold_13340 4961933 83 - 23697760 ---------------------UAUUUGGAAUAUAGCGUGUGGUUGUGCCCCCGGCCGACUCCGGC-AAGCUAGUGACGCCAAAACUGUGCAGCGGAUGUGCAACA ---------------------..(((((....((((.((((((((.(((...))))))))...))-).))))......)))))..((..((.....))..))... ( -24.40, z-score = 0.53, R) >droWil1.scaffold_181130 10501649 88 - 16660200 ----------------UAUACCUUCUUCUACAAAACCCAAGGCCGG-CCAAAGGUAAUCCUCAAGGUGAUUAGUGCUUCUCAAACUGUUAAACGAAAUGUGUGCA ----------------(((((.(((.........(((..(((...(-((...)))...)))...)))...((((.........))))......)))..))))).. ( -10.30, z-score = 1.99, R) >consensus __UAUCCCUC___CAAUAGUGUGACCCACAGGUAAACUGGGGUCAU__CC_AAACAGACCUCGAC__CCCCAGUGACUGCAAAACCGCGUGGCUGCCUUA_____ ....................(((((((.(((.....))))))))))........................((((.((.((......)))).)))).......... (-12.31 = -11.83 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:16 2011