| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,075,291 – 27,075,384 |
| Length | 93 |
| Max. P | 0.905014 |
| Location | 27,075,291 – 27,075,384 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Shannon entropy | 0.35694 |
| G+C content | 0.46120 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -17.44 |
| Energy contribution | -18.05 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27075291 93 + 27905053 CGUCUACCC---GUGUGUAUGGAUGCGAGUUGGGCACACAUUCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUCCGAAGUGAAACAA-AAAAGGGU .....((((---((((((...(((....)))..)))))).((((.(((((.(((((((((....))))))))).))))).))))....-....)))) ( -31.20, z-score = -3.03, R) >droSim1.chr3R 26718330 96 + 27517382 CGUCUGCCCGCCGUGUGGAUGGAUGCGAGUUGGGCACACAUCCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUCCGAAGUGAAACAA-AAAAGGGU .....((((((((..((((((..(((.......)))..))))))...))))(((((((((....)))))))))...............-....)))) ( -33.90, z-score = -2.31, R) >droSec1.super_4 5892786 96 + 6179234 CGUCUGCCCGCCGUGUGGAUGGAUGCGAGUUGGGCACACAUCCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUCCGAAGUGAAACAA-AAAAGGGU .....((((((((..((((((..(((.......)))..))))))...))))(((((((((....)))))))))...............-....)))) ( -33.90, z-score = -2.31, R) >droEre2.scaffold_4820 9565694 85 - 10470090 ------------GGCUGUGUGGAUGCCUGUCGGGCACACAUCCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUCCGAAAUGAAACAACAAAAGCGU ------------.((((((((..((((.....))))))))).((.(((((.(((((((((....))))))))).))))).))..........))).. ( -26.90, z-score = -2.00, R) >droYak2.chr3R 28012009 87 + 28832112 ----------AGCUGUGUGUGGAUGCCAGUUGGGCACACAUCCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUCCGAAAUGAAACAGAAAGAGCGC ----------.(((.((((((..((((.....))))))))).((.(((((.(((((((((....))))))))).))))).))........).))).. ( -27.10, z-score = -1.86, R) >droAna3.scaffold_13340 4958419 91 + 23697760 GGCCAGCUU---GUGUCUGUGGAUGUGAGUUGGGCAUAAAACCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUC-GAAACGAAACAGUAAGAGU-- (.((((((.---.((((....))))..)))))).)..........(((((.(((((((((....)))))))))))-)))................-- ( -26.40, z-score = -2.06, R) >consensus CGUCUGCCC___GUGUGUAUGGAUGCGAGUUGGGCACACAUCCAAUUUGGCGUUGAAUGAAUUUUUAUUCGGCUCCGAAAUGAAACAA_AAAAGGGU ...................((((((.(.(.....).).)))))).(((((.(((((((((....))))))))).))))).................. (-17.44 = -18.05 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:15 2011