| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,073,409 – 27,073,506 |
| Length | 97 |
| Max. P | 0.997828 |
| Location | 27,073,409 – 27,073,506 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.90 |
| Shannon entropy | 0.33591 |
| G+C content | 0.41194 |
| Mean single sequence MFE | -31.26 |
| Consensus MFE | -21.06 |
| Energy contribution | -22.54 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.37 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.997828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27073409 97 + 27905053 CCGCCAAACACCGCUCCCUUUGCACACAGAGAAAAGGAGGACCAAUAUCUAUAUCUACAGAUAUUGGUAGCUGGGUAAAUAGUACUAUAAC----UUCCUU------------ ..((........))...(((((....)))))..(((((((((((((((((........)))))))))).((((......)))).......)----))))))------------ ( -24.80, z-score = -2.39, R) >droSim1.chr3R 26716498 107 + 27517382 CCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGCACCGAUAUCUAAAUCUACAUAUAUUGGUAGUUGGGUAAAUAUUACUAUAUC----UUUAGUAAUCAGACUU-- ..(((((((...((((((((((....)))))....)))))((((((((............)))))))).)))))))....(((((((....----..))))))).......-- ( -32.30, z-score = -4.15, R) >droSec1.super_4 5890960 107 + 6179234 CCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGGAGCAAUAUCUAAGUCUACAGAUAUUGGUAGUUGGGUAAAUAUUACUAUAUC----UUCAGUAAUCAGACUU-- ..(((((((((((((((((((.............)))))))))(((((((........)))))))))).)))))))....((((((.....----...)))))).......-- ( -36.22, z-score = -4.53, R) >droEre2.scaffold_4820 9563872 110 - 10470090 CCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGGG-CAAUAUCUGUAUCUACUGAUAUUGGUAGUUGGGUAAAUAUAUCUAUCUU--UGUUGAGUAAUCAAACCUUU ..(((((((((((((((((((............))))))))-)((((((.((....)).))))))))).)))))))...............--..((((....))))...... ( -36.50, z-score = -3.64, R) >droYak2.chr3R 28010063 111 + 28832112 CCGCCCAGCACCGCUCCCUUUGCACACAGCGAAAAUGGAA--CUAUAUUUGUGUCUACUGAUAUUGGUAGUUGGGUAAAUAUUUCUAUAUCACUCUUGAGUAAUCAAACUUUU ..((((((((((..(((.(((((.....)))))...))).--........(((((....))))).))).)))))))...................((((....))))...... ( -26.50, z-score = -2.11, R) >consensus CCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGGA_CAAUAUCUAUAUCUACAGAUAUUGGUAGUUGGGUAAAUAUUACUAUAUC____UUCAGUAAUCAAACUU__ ..((((((((((.((((((((...........))))))))...(((((((........)))))))))).)))))))..................................... (-21.06 = -22.54 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:14 2011