| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,322,500 – 9,322,609 |
| Length | 109 |
| Max. P | 0.764009 |
| Location | 9,322,500 – 9,322,609 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 88.45 |
| Shannon entropy | 0.22050 |
| G+C content | 0.38454 |
| Mean single sequence MFE | -27.93 |
| Consensus MFE | -17.60 |
| Energy contribution | -18.33 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764009 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9322500 109 + 23011544 UAUGCAAAAUGGCGUUGUGUGAGAAUUACUGCCG-UAACAAGGAAACAAAUUAGCUUCUGACCACGGG-AAACUAACCGAAUUAUGUUGAUUUGUUUCCCAUUUUCCGAAA ..((.((((((..((((((..((.....))..))-))))..((((((((((((((...(((...(((.-.......)))..))).)))))))))))))))))))).))... ( -27.00, z-score = -2.14, R) >droAna3.scaffold_12943 663510 111 + 5039921 UAUGCAAAAUGGCAGUGUUCUGCAAUUAUUGCCGGCAACAAGGAAACAAAUUAGCUCUUGACCACGGGAAAACCAGCCGAAUUAUGUUGAUUUGUUUGCCGUUUUCCGAAA ...(((((((.((((....)))).))).))))(((......((((((((((((((...(((...(((.........)))..))).)))))))))))).)).....)))... ( -28.10, z-score = -0.79, R) >droEre2.scaffold_4929 9932956 108 + 26641161 UAUGCAACAUGACGUUGUGUAGGAAUUACUGCCG-UAGCAAGGAAACAA-UUAGCUUCUGACCACGGG-AAACUGACCAAAUUAUGUUGAUUUGUUUCCCAUUUUGCGAAA ..(((((.(((..(((((((((......))).))-))))..((((((((-(((((.........(((.-...)))..........))))).))))))))))).)))))... ( -28.41, z-score = -2.18, R) >droYak2.chr2L 11992352 109 + 22324452 UAUGUAAAAUGACGUUGUGUGAGAAAUACUGCCG-UAACAAGGAAACAAAUUAGCUUCUGACCACGGG-AAACUAACCGAAUUAUGUUGAUUUGUUUCCCAUUUUGCGAAA ..((((((((((((..((((.....))))...))-).....((((((((((((((...(((...(((.-.......)))..))).)))))))))))))))))))))))... ( -32.40, z-score = -4.68, R) >droSec1.super_3 4780757 104 + 7220098 ----GAAAAUGGCGUUGUGUGAGAAUUACUGCCG-UAACAAGGAAACAAAUUAGCUUCUGACCACGG--AAACAAACCGAAUUAUGUUGAUUUGUUUCCCAUUUUCCGAAA ----(((((((..((((((..((.....))..))-))))..((((((((((((((...(((...(((--.......)))..))).)))))))))))))))))))))..... ( -27.70, z-score = -3.03, R) >droSim1.chr2L 9099771 109 + 22036055 UAUGUAAAAUAGAGUUGUGUGAGAAUUACUGCCG-UAACAAGGAAACAAAUUAGCUUCUGACCACGGG-AAACAAACCGAAUUAUGUUGAUUUGUUUCCCAUUUUCCGAAA ..((.(((((......((((.((((((((....)-)))...(....)........)))).).)))(((-(((((((.(((......))).))))))))))))))).))... ( -24.00, z-score = -1.80, R) >consensus UAUGCAAAAUGGCGUUGUGUGAGAAUUACUGCCG_UAACAAGGAAACAAAUUAGCUUCUGACCACGGG_AAACUAACCGAAUUAUGUUGAUUUGUUUCCCAUUUUCCGAAA .....((((((...((((...................))))((((((((((((((...(((...(((.........)))..))).))))))))))))))))))))...... (-17.60 = -18.33 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:58 2011