| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,044,630 – 27,044,734 |
| Length | 104 |
| Max. P | 0.942251 |
| Location | 27,044,630 – 27,044,734 |
|---|---|
| Length | 104 |
| Sequences | 13 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 66.29 |
| Shannon entropy | 0.76248 |
| G+C content | 0.46997 |
| Mean single sequence MFE | -28.65 |
| Consensus MFE | -9.73 |
| Energy contribution | -9.74 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27044630 104 + 27905053 -----AAUUCGGACAUAAAAAU--GGGGAAGGGGUACUUACGGCGCUCCUGGCAACUGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUCGGUUGAAUUUCCUUUUUG--- -----.................--.(((((((((..((..((..(((((.(....).)))))..))..))......(((((.((((....-)))))))))..))))))))).--- ( -28.60, z-score = -1.32, R) >droSim1.chr3R 26687795 105 + 27517382 -----AAUUCAGGCAAUAAAACGGGGGGAGGGG-UACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUCGGUUGAAUUUCCUUUUUG--- -----.................(((((((((((-(.((..((..(((((((....)))))))..))..))..))).(((((.((((....-))))))))).)))))))))..--- ( -32.80, z-score = -2.08, R) >droSec1.super_4 5862620 106 + 6179234 -----AAUUCAAGCAAUAAAACGGGGGGAGGGGGUACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUCGGUUGAAUUUCCUUUUUG--- -----...................(((((((..((.((..((..(((((((....)))))))..))..))......(((((.((((....-)))))))))))..))))))).--- ( -35.20, z-score = -2.84, R) >droYak2.chr3R 27980957 102 + 28832112 -----AAUUCGGGCCUAAAAA----GGGGGGGUUUACUUACGGCGAUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUUGGUUGAUUUUCCUUUUUG--- -----..........((((((----((..((((((.((..((....(((((....)))))....))..)))))))((((((.((((....-)))))))))))..))))))))--- ( -31.10, z-score = -1.70, R) >droEre2.scaffold_4820 9533700 101 - 10470090 -----AAUUGAGGCAUAAAAA-----AGGGGGGGUACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUCGGUUGAAUUUCCUUUUUG--- -----............((((-----(((..((((.((..((..(((((((....)))))))..))..))..))).(((((.((((....-))))))))).)..))))))).--- ( -35.50, z-score = -3.55, R) >droAna3.scaffold_13340 14435944 105 + 23697760 ---------AAGGUACACAGACUCAUUCGAAUUGUACUUACAGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUC-UUCGGUUGAUUUUUUUUUUUUAGA ---------.(((((((..((.....))....)))))))...(((((((((....)))))))...))((((((..((((((.((((....-))))))))))..))))))...... ( -32.50, z-score = -3.30, R) >dp4.chr2 30708352 111 - 30794189 AAAGGCACAACAAGAGUAACGUCACAUUUUCGUCUACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUCAGUUGAUUUUUUUUUUUG--- .......((((.........((((((.....((((.((..((..(((((((....)))))))..))..))))))))).)))..(((....-))).)))).............--- ( -30.40, z-score = -2.13, R) >droPer1.super_7 1567587 111 - 4445127 AAAGGCACAACAAGAGUAACGUCACAUUUUCGUCUACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUCAGUUGAUUUUUUUUUUUG--- .......((((.........((((((.....((((.((..((..(((((((....)))))))..))..))))))))).)))..(((....-))).)))).............--- ( -30.40, z-score = -2.13, R) >droWil1.scaffold_181108 711631 111 + 4707319 --ACACAUGGACUACACAAUUGUUGUAAAUUUUAUACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUUAGUUGAUUUCUUUUUUUUGG- --..............(((..(((((((.........)))))))(((((((....))))))).....((((((..((((((.........-....)))))).))))))..))).- ( -28.02, z-score = -2.83, R) >droMoj3.scaffold_6540 7173242 90 - 34148556 --------------AAAGAGUUAACACGUUU-UCUACUUACCGCGGUCCUGGCAACGGGAGCAAUGCGAGAGACUGUCGACACGAACAUU-UUUAGUUGAAUUUUA--------- --------------.((((.(((((......-.........((((.(((((....)))))....)))).((((.(((((...)).))).)-))).))))).)))).--------- ( -19.40, z-score = -0.12, R) >droVir3.scaffold_12855 8933409 90 - 10161210 --------------AAAAACUUUACCCAUUU-UGUACUUACCACGGUCCUGGCAACAGGGGCAAUGCGAGAGACUGUCGACACGAACAUU-UUUAGUUGAAUUGUA--------- --------------.................-............(.(((((....))))).)..(((((..(((((..((........))-..)))))...)))))--------- ( -16.50, z-score = 0.57, R) >anoGam1.chrX 12689823 104 - 22145176 --AAUGCAGCAGUAGGAAGGUGGUAUUGGCACAUCACUUACCAGGCUUCGGGCAACUGGGGCAAUGCGGGCGGCCGACGAGACGAACAUGAUGAUGUUGUUUUUUG--------- --..(((.(((...((.(((((((........))))))).))..(((((((....)))))))..)))..)))......(((((.(((((....))))))))))...--------- ( -32.20, z-score = -1.14, R) >triCas2.ChLG10 540174 91 - 8806720 ----------GGAAAUAAAAA-------GGGUGGUACUUACGGCGCUCCUGGCGGCGGGGGCGAU-CAAUCUAGCGCAGGCGAACAUUUUAUUUAAUUAAAUUUAGUCG------ ----------.....((((.(-------(((((........((((((((((....)))))))).)-)......((....))...)))))).))))..............------ ( -19.80, z-score = 0.26, R) >consensus _____AAUUCAGGCAAAAAAAU__CGGGGGGGUGUACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUU_UUCAGUUGAAUUUUCUUUUUG___ ...............................................((((....))))((((...(....)..))))..................................... ( -9.73 = -9.74 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:09 2011