| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,041,959 – 27,042,069 |
| Length | 110 |
| Max. P | 0.923056 |
| Location | 27,041,959 – 27,042,069 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 66.69 |
| Shannon entropy | 0.70119 |
| G+C content | 0.28812 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -5.37 |
| Energy contribution | -5.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27041959 110 + 27905053 -AAUAUUAA-GUGGCAAUG--AACAAAGACAGCUUUUACAU-AAAGAAACUGAUUUUUUCGAAUACAAAAUACUUGAA---AAAACGUAGACUUUCAGUACGCGCCACAAUAAAAUCG -........-(((((....--...........((((.....-))))..((((((((((((((.((.....)).)))))---)))).........)))))....))))).......... ( -17.90, z-score = -1.84, R) >droGri2.scaffold_14624 416002 98 - 4233967 -AUGAUUAAAGUGGCAAUA-----AAAAUUUGUUAAUACAAAAACAAAAAAGAACACU---AAUUGAA---ACUUAAG---GAAAU----GUUAUCAGUACGCGCCACAUCAAUUCA- -.((((....(((((....-----....((((((........))))))..........---.((((((---((.....---.....----))).)))))....))))))))).....- ( -15.70, z-score = -1.86, R) >droMoj3.scaffold_6540 7170652 101 - 34148556 -AUGAUUAA-GUGGCAUU-----CAAGAAAUAAUUUAACAAAUAGAAAAACAUGUUUU--AAAUACAAUAAACUUAAA---GAAAC----GUUAUCAGUACGCGCCACA-UAAUUCAA -.((((((.-(((((...-----.........((((((..((((........))))))--))))..............---....(----((.......))).))))).-))).))). ( -12.90, z-score = -1.20, R) >droVir3.scaffold_12855 8930811 101 - 10161210 -AUGAUUAA-GUGGCAAU-----UAAUAAAUGUUUAAACAAAAAGAAAAACAAGUUCU--AAAUACAAUAAACUUAAA---GAAAC----GUUAUCAGUACGCGCCACA-UAAAUUCA -........-(((((...-----........(((((.......((((.......))))--........))))).....---....(----((.......))).))))).-........ ( -12.16, z-score = -0.98, R) >droWil1.scaffold_181108 709017 89 + 4707319 UGAUACUAA-GUGGCAAUA-----AUAAACAAAAAUUAUUA-ACUGCAUUUAAAUU------AUUAAAUAUUCUCGAA---------------UUCAGUACAGGCCACAUAAAAUCG- .(((..((.-(((((((((-----((........)))))).-((((.((((.....------.............)))---------------).))))....))))).))..))).- ( -13.87, z-score = -2.71, R) >droPer1.super_7 1564798 112 - 4445127 -AAUAUUAA-GUGGCAAUACAAAAAUUAACUGCGUUUACAUUAAGGAAAUUGAUUUUCGAAUACAAAAUACACUUGAA---AAGAAAUGGGUUCUCAGUACAUGCCACA-UAAAAUAG -........-((((((.(((.............(....)....((((.(((..(((((((.............)))))---))..)))...))))..)))..)))))).-........ ( -16.42, z-score = -0.92, R) >dp4.chr2 30705560 112 - 30794189 -AAUAUUAA-GUGGCAAUACAAAAAUUAACUGCGUUUACAUUAAGGAAAUUGAUUUUCGAAUACAAAAUACACUUGAA---AAGAAAUAGGUUCUCAGUACAUGCCACA-UAAAAUAG -........-((((((.(((.....((((.((..(((.......(((((....))))).......)))..)).)))).---.((((.....))))..)))..)))))).-........ ( -15.54, z-score = -0.94, R) >droAna3.scaffold_13340 14433273 93 + 23697760 -UAUUUUAA-GUGGCAAU---AAAAUUA---GCGAUUACAUUAAGGAAACUGAU--------ACAAAA----CUCGUG---AAACAAUAGGUUUUCAGUACACGCCACU-UAAAUUG- -...(((((-(((((...---.......---((((........((....))...--------......----.))))(---((((.....)))))........))))))-))))...- ( -20.97, z-score = -3.60, R) >droEre2.scaffold_4820 9531034 111 - 10470090 -AACAUUAA-GUGGCAAUG--AACAAAAACAGCGUUUACAU-AAAGUAACUGAUUUUUUCGAAUACAAAAUACUUGAA--AAAAACCUAGGUUUUCAGUACGCGCCACAAUAAAAUCG -........-(((((..((--........))((((.(((..-...)))((((((((((((((.((.....)).)))))--))))((....))..)))))))))))))).......... ( -22.20, z-score = -3.00, R) >droYak2.chr3R 27978324 111 + 28832112 -AAUAUUAA-GUGGCAAUG--AACAAAAACAGCGUUUACAU-AAAGAAACUAACUUUU-CGAAUACAAAAUAUUUGAAUAAAAAACGUAGGUUU-CAGUACGCGCCACAAUAAAAUCG -........-(((((..((--(((.........)))))...-...((((((.((..((-((((((.....))))))))........)).)))))-).......))))).......... ( -20.30, z-score = -2.60, R) >droSec1.super_4 5859960 111 + 6179234 UAAUAUUAA-GUGGCAAUG--AACAAAAACAGCGUUUACAU-AAAGAAACUGAUUUUUUCGAAUACAAAAUACUUGAA---AAAACGUAGACUUUCAGUACGCGCCACAAUAAAAUCG .........-(((((..((--........))((((..((..-((((...(((.(((((((((.((.....)).)))))---))))..))).))))..))))))))))).......... ( -19.40, z-score = -2.37, R) >droSim1.chr3R 26685122 111 + 27517382 UAAUAUUAA-GUGGCAAUG--AACAAAAACAGCGUUUACAU-AAAGAAACUGAUUUUUUCGAAUACAAAAUACUUGAA---AAAACGUAGACUUUCAGUACGCGCCACAAUAAAAUCG .........-(((((..((--........))((((..((..-((((...(((.(((((((((.((.....)).)))))---))))..))).))))..))))))))))).......... ( -19.40, z-score = -2.37, R) >consensus _AAUAUUAA_GUGGCAAUG__AACAAAAACAGCGUUUACAU_AAAGAAACUGAUUUUU__GAAUACAAAAUACUUGAA___AAAAC_UAGGUUUUCAGUACGCGCCACA_UAAAAUCG ..........(((((........................................................................................))))).......... ( -5.37 = -5.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:06 2011