| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,025,163 – 27,025,257 |
| Length | 94 |
| Max. P | 0.719085 |
| Location | 27,025,163 – 27,025,257 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 72.40 |
| Shannon entropy | 0.59869 |
| G+C content | 0.57435 |
| Mean single sequence MFE | -30.61 |
| Consensus MFE | -15.23 |
| Energy contribution | -15.60 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27025163 94 - 27905053 UAAAAGGCCAUCGGUGCGCACCGGCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAGCUCCUGCUGGCUGUGUCCAGUAGCC- .....(((.((.((.((((((((((..((((....))----)).........(((((((......)))))))......))))).))))))).)).)))- ( -33.60, z-score = -1.70, R) >droSim1.chr3R 26668103 94 - 27517382 UAAAAGGCCAUCGGUGCGCACCGGCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAGCUCCUGCUGGCUGUGUCCAGUAGCC- .....(((.((.((.((((((((((..((((....))----)).........(((((((......)))))))......))))).))))))).)).)))- ( -33.60, z-score = -1.70, R) >droSec1.super_4 5843231 94 - 6179234 UAAAAGGCCAUCGGUGCGCACCGGCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAGCUCCUGCUGGCUGUGUCCAGUAGCC- .....(((.((.((.((((((((((..((((....))----)).........(((((((......)))))))......))))).))))))).)).)))- ( -33.60, z-score = -1.70, R) >droYak2.chr3R 27961319 94 - 28832112 UAAAAGGCCAUCGGUGCGCACCGGCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAGCUCCUGCUGGCUGUGUCCAGUAGCC- .....(((.((.((.((((((((((..((((....))----)).........(((((((......)))))))......))))).))))))).)).)))- ( -33.60, z-score = -1.70, R) >droEre2.scaffold_4820 9513344 94 + 10470090 UAAAAGGCCAUCGGUGCGCACCGGCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAGCUCCGGCUGCCUGUGUCCAGCAGCC- ............((.(((((..(((......))))))----...........(((((((......))))))))).))((((((.((....))))))))- ( -31.60, z-score = -0.63, R) >droAna3.scaffold_13340 14409753 95 - 23697760 UAAGAGGCCAGCGGUGCGCACCGUCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAACUCCUGCUGGCUGCUUCGACCCGUCC .(((.((((((((((((((((........))))..))----)..........(((((((......)))))))....))))))))).))).......... ( -32.70, z-score = -1.96, R) >dp4.chr2 30689191 87 + 30794189 UAAGAGGCCAGCGGUGCGCACCGUCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGGAGCUCCUCUGUCCCACUGCC-------- ....(((((((((((....))))....))).))))((----(((...........((((......))))((..(......)..))))))).-------- ( -22.90, z-score = 0.41, R) >droPer1.super_7 1548429 87 + 4445127 UAAGAGGCCAGCGGUGCGCACCGUCUCCUGUGUCUGC----AGUCCAUAAAAUGCGGGACUUAAUUCCUGGAGCUCCUCUGUCCCACUGCC-------- ....(((((((((((....))))....))).))))((----(((...........((((......))))((..(......)..))))))).-------- ( -22.90, z-score = 0.41, R) >droVir3.scaffold_12855 8912200 75 + 10161210 CAAGAGGCCAGCGGUGCGCACCGUUUGCUGUGUCUGC----AGUCCAUAAAAUGCGGGAUUUAAUUCCUGCAAUUCGCU-------------------- .....(((.((((((....)))))).(((((....))----)))........(((((((......)))))))....)))-------------------- ( -23.00, z-score = -0.62, R) >droGri2.scaffold_14624 393375 75 + 4233967 UAUAAGCCCAGCGGUGCGCACCGUUUGCUGUGUCUGC----AGUCCAUAAAAUGCGGGAUUUAAUUCCUGCAGCUCGCU-------------------- .........(((((.((.........(((((....))----)))........(((((((......))))))))))))))-------------------- ( -23.30, z-score = -0.90, R) >droMoj3.scaffold_6540 7152506 75 + 34148556 GAGGAGGCCAGCGGUGCGCACCGUUUGCUGUGUCUGC----AGUCCAUAAAAUGCGGGAUUUAAUUCCUGCAGCUCGCU-------------------- (((..((..((((((....)))))).(((((....))----)))))......(((((((......))))))).)))...-------------------- ( -25.80, z-score = -0.51, R) >anoGam1.chrX 9858425 94 - 22145176 ----GAGCAGACCGCGCGGAUCGAUCCGAUCGGCCGCGCCGAGCCCGUACCGGGCGUACUGGAGCUCUGGCAGGGGUUCGCUGGCGGCCUCGUCUGCU- ----.(((((((......(((((...)))))((((((..(((((((.(.((((((........)).)))).).)))))))...))))))..)))))))- ( -50.70, z-score = -1.60, R) >consensus UAAAAGGCCAGCGGUGCGCACCGUCUCCUGUGUCUGC____AGUCCAUAAAAUGCGGGACUUAAUUCCUGCAGCUCCUGCUGGCUGUGUCCA___GCC_ ....(((((((((((....)))))....)).)))).................(((((((......)))))))........................... (-15.23 = -15.60 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:05 2011