| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,019,658 – 27,019,764 |
| Length | 106 |
| Max. P | 0.973675 |
| Location | 27,019,658 – 27,019,764 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.96 |
| Shannon entropy | 0.33392 |
| G+C content | 0.61286 |
| Mean single sequence MFE | -47.18 |
| Consensus MFE | -36.88 |
| Energy contribution | -36.37 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27019658 106 - 27905053 UCUUGGGCUUGGGUGGUGGCACUUGUCCGGUCACGGAACCACUGAGACUGUGGUCGCUGCCCAGGAAACUGUUGGCGGUGCUGCUGUUGGCGGUGGUUGUGGCAAC ...(((((...((((....)))).)))))((((((..(((((((.(((.(..(.((((((((((....)))..))))))))..).)))..)))))))))))))... ( -50.80, z-score = -3.16, R) >droSim1.chr3R 26660889 106 - 27517382 UCUUGGGCUUGGGUGGUGGCACUUGACCGGUCACGGAACCACUGAGACUGUGGUCGCUGCCCAGGAAACUGUUGGCGGUGCUGCUGUUGGCGGUGGUGGUGGCAAC .....((.(..((((....))))..))).(((((...(((((((.(((.(..(.((((((((((....)))..))))))))..).)))..))))))).)))))... ( -50.70, z-score = -3.03, R) >droSec1.super_4 5837796 106 - 6179234 UCUUGGGCUUGGGUGGUGGCACUUGACCGGUCACGGAACCACUGAGACUGUGGUCGCUGCCCAGGAAACUGUUGGCGGUGCUGCUGUUGGCGGUGGUGGUGGCAAC .....((.(..((((....))))..))).(((((...(((((((.(((.(..(.((((((((((....)))..))))))))..).)))..))))))).)))))... ( -50.70, z-score = -3.03, R) >droYak2.chr3R 27955693 106 - 28832112 UCUUGGGCUUGGGUGGUGGCACUUGACCGGUAACGGAACCACUGAGACUGUGGUUGCUGCCCAGGAAACUGUUGGCGGUGCUGCUGUUGGCGGUGGUAGUGGCCAC (((((((((..((((....))))..)(((....)))((((((.......))))))...)))))))).(((((..((((.....))))..)))))(((....))).. ( -47.10, z-score = -2.34, R) >droEre2.scaffold_4820 9507550 106 + 10470090 UCUUGGGCUUGGGUGGCGGCAUUUGACCGGUCACGGAACCACUGAGACUGUGGUCGCUGCCCAGGAAACUGUUGGCGGUGCUGCUGUUGGCGGUGGUGGUGGCAAG .....((.(..((((....))))..))).(((((...(((((((.(((.(..(.((((((((((....)))..))))))))..).)))..))))))).)))))... ( -48.30, z-score = -2.35, R) >droAna3.scaffold_13340 14404177 103 - 23697760 GUUUUGGCUUAGGUGGGGGCACUUGGUGAGCAACGCUACCGCCGCUGAUGGAGCUGCCGUUCAGGCUGUGGUUGCUGGUGUUGUUGCUGUUGCAGGUGGCAAG--- (((...((...((..(.((((((.....((((..(((((.(((...(((((.....)))))..))).))))))))))))))).)..))...))....)))...--- ( -35.50, z-score = 1.12, R) >consensus UCUUGGGCUUGGGUGGUGGCACUUGACCGGUCACGGAACCACUGAGACUGUGGUCGCUGCCCAGGAAACUGUUGGCGGUGCUGCUGUUGGCGGUGGUGGUGGCAAC ...(((..(((((((....))))))))))(((((...(((((((.(((.((((.((((((((((....)))..))))))))))).)))..))))))).)))))... (-36.88 = -36.37 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:04 2011