| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,012,061 – 27,012,157 |
| Length | 96 |
| Max. P | 0.665242 |
| Location | 27,012,061 – 27,012,157 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 73.04 |
| Shannon entropy | 0.56172 |
| G+C content | 0.48329 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -9.29 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27012061 96 + 27905053 ---ACGGCCGACACAUUGGCGACGCCAACGC-------GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGCCGCGUA--ACACACUCACAC ---..(((((.....(((((...)))))..)-------))))((((((((((((......(((..(.....)..)))....)))))))))))).--............ ( -32.30, z-score = -3.50, R) >droSim1.chr3R 26653078 98 + 27517382 ---ACGGCCGACACAUUGGCGACGCCAACGC-------GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGCCGCGUAGCACACACUCACAC ---...(((((....)))))..(((....))-------)(((((((((((((((......(((..(.....)..)))....)))))))))))))))............ ( -36.50, z-score = -4.47, R) >droSec1.super_4 5830167 98 + 6179234 ---ACGGCCGACACAUUGGCGACGCCAACGC-------GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGCCGCGUAGCACACACUUACAC ---...(((((....)))))..(((....))-------)(((((((((((((((......(((..(.....)..)))....)))))))))))))))............ ( -36.50, z-score = -4.54, R) >droYak2.chr3R 27947838 96 + 28832112 ---ACGACCGACACAUUGGCGACGCCAACGC-------GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGCCGCGUA--GCACACUCAUAC ---.((.((((....)))))).(((....))-------)(((((((((((((((......(((..(.....)..)))....)))))))))))))--)).......... ( -35.00, z-score = -4.44, R) >droEre2.scaffold_4820 9497116 96 - 10470090 ---ACUGCCGACACAUUGGCGACGCCAACGC-------GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGACGCGUA--GCACACUCACAC ---..((((((....)))))).(((....))-------)((((((((.((((((......(((..(.....)..)))....)))))).))))))--)).......... ( -29.50, z-score = -2.76, R) >droAna3.scaffold_13340 14396757 89 + 23697760 ---ACGGCCGACACAUUGGCGACGCCAUAGC-------GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGCCGCGAACGCCG--------- ---..(((((......((((...))))...)-------)))).(((((((((((......(((..(.....)..)))....))))))))))).......--------- ( -30.90, z-score = -2.21, R) >dp4.chr2 30673754 99 - 30794189 ---ACGUCCGACACAUUGGCGACGCCGAAGCCGAC-GCGGCAACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAGCAGCAUCACUUCUUUUCUU----- ---.((.((((....)))))).....((((..(((-(((....))))((((((((.(((.......)))....))).))))).......)).)))).......----- ( -21.70, z-score = 0.31, R) >droPer1.super_7 1532996 99 - 4445127 ---ACGUCCGACACAUUGGCGACGCCGAAGCCGAC-GCGGCAACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAGCAGCAUCACUUCUUUUCUU----- ---.((.((((....)))))).....((((..(((-(((....))))((((((((.(((.......)))....))).))))).......)).)))).......----- ( -21.70, z-score = 0.31, R) >droWil1.scaffold_181108 678446 84 + 4707319 ---ACGUCCGACACAUAGGCGACGCUGCUGCU------GGCAACGUGCCGUAUGAUUUAUAUGUUUUAAUUAUUCAUUACGCAUACGCCACGU--------------- ---.((.((........))))..(((......------))).(((((.((((((......(((..(.....)..)))....)))))).)))))--------------- ( -19.70, z-score = 0.18, R) >droVir3.scaffold_12855 8893634 106 - 10161210 CGCACUUACAACUCGCUGCCCACAUUGAUGCUGACAGCGGCAACAUGGCGUAUGAUUUAUUUUCCUUAAUUAUUCAUUACACAUGCCGCACGAAGUAGGAUUUCGC-- ....(((((...(((.(((......((.(((((....))))).)).(((((((((...(((......)))...)))).....))))))))))).))))).......-- ( -22.80, z-score = -0.54, R) >droGri2.scaffold_14624 374571 106 - 4233967 CACACUUUCAAGUCGCUUCCGACGGUGGCUCUGACAGCGGCAACAUGGCGUAUGAUUUAUACGCUUUAAUUAUUCAUUACGCAUGUCUCUUAAAAUAGGCUUUCGC-- .........((((((((.((...)).)))...(((((((....)..((((((((...))))))))...............)).))))..........)))))....-- ( -23.10, z-score = -0.59, R) >consensus ___ACGGCCGACACAUUGGCGACGCCAACGC_______GGCUACGUGGCGUAUGAUUUAUAUGCUUUAAUUAUUCAUUACGCAUACGCCGCGUA__ACACACUCAC__ ...........(((.(((((...))))).((........))...)))((((((((.(((.......)))....))).))))).......................... ( -9.29 = -10.06 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:59:02 2011