| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,297,994 – 9,298,085 |
| Length | 91 |
| Max. P | 0.587427 |
| Location | 9,297,994 – 9,298,085 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 62.65 |
| Shannon entropy | 0.73471 |
| G+C content | 0.53002 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -9.48 |
| Energy contribution | -10.21 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9297994 91 - 23011544 ACCAGUCCGUCCAUCAGUUGGAUAGAA--AGGG--AGAAGGACAGCCGGACGGUAACUAAGCCAGACUGUCAAACAGUUGGCUUUC-------CCCAUGGUG ((((.((..((((.....))))..)).--.(((--.(((((.((((..((((((...........)))))).....)))).)))))-------))).)))). ( -31.00, z-score = -1.93, R) >droVir3.scaffold_12963 721580 73 - 20206255 --------------------GUCUGAAGCUCUGCUCGUGGGCCGACAGUUCGUUAGCUGCUGUGCCUUUUCGAG-AGUUGGCGCU-------GUCCACGCG- --------------------...............(((((((.(.((((......))))).(((((....(...-.)..))))).-------)))))))..- ( -22.50, z-score = 0.66, R) >droAna3.scaffold_12943 638424 102 - 5039921 ACCAGUCAGUCAGGUGGACAGAGACAACUACAGAUAGACCAAAAGAGACAGAAUGAGAAAGAGGAACUGUCAAACAGCUGGCUUUCAGAUUAAACCGUGGUG (((((((.(((..((((..........)))).))).))).................(((((.....(((.....)))....)))))...........)))). ( -17.20, z-score = 1.22, R) >droEre2.scaffold_4929 9906540 91 - 26641161 AGCAGUCCGUCCGUCAGUUGGACAGAA--AGGG-AAAAAGGACAGGCGGGCGUUAACUAAACCAGACUGUCAAACAGUUGGCUUU--------CCCAUGGUG ....(((((((.(((..((...(....--..).-..))..))).))))))).........(((((((((.....)))))((....--------.)).)))). ( -25.10, z-score = -0.18, R) >droYak2.chr2L 11966857 93 - 22324452 ACCAGUCCGUCCGUCAGUUGGACAGGA--AGGGAAAAAAGAACCGCCGGGCGUUAACUAAGCCAGACUGUCAAACAGUUGGCUUUC-------CCCACGGUG .((..((((((((.....))))).)))--..))........((((..(((.(......(((((((.(((.....)))))))))).)-------))).)))). ( -34.60, z-score = -2.51, R) >droSec1.super_3 4756490 91 - 7220098 ACCAGUCCGUCCGUCAGUUGGACAGAA--AGGG--AAAAAGACAGCCGGGCGGUAACUAAGCCAGACUGUCAAACAGUUGGCUUUC-------CCCAUGGUA .((..((.(((((.....))))).)).--.)).--.........((((((.((.....(((((((.(((.....)))))))))).)-------))).)))). ( -31.50, z-score = -2.02, R) >droSim1.chr2L 9074692 82 - 22036055 ----ACCAGUCCGUCAGUUGGACAGAA--AGGG--AAAA-----GCCGGGCGGUAACUAAGCCAGACUGUCAAACAGUUGGCUUUC-------CCCAUGGUG ----(((((((((.....)))))....--.(((--.(((-----(((.(((.........))).(((((.....))))))))))).-------))).)))). ( -34.30, z-score = -3.59, R) >consensus ACCAGUCCGUCCGUCAGUUGGACAGAA__AGGG__AAAAGGACAGCCGGGCGGUAACUAAGCCAGACUGUCAAACAGUUGGCUUUC_______CCCAUGGUG ........(((((.....)))))...................................(((((((.(((.....)))))))))).................. ( -9.48 = -10.21 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:57 2011