| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,972,328 – 26,972,431 |
| Length | 103 |
| Max. P | 0.513380 |
| Location | 26,972,328 – 26,972,431 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.33 |
| Shannon entropy | 0.26149 |
| G+C content | 0.39673 |
| Mean single sequence MFE | -25.79 |
| Consensus MFE | -16.60 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26972328 103 - 27905053 -AAACCAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUCGGCCAAGUUAAUGUGCCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-GCACAAAC-------------- -.((((.....-((....))......))))....((((..((((((..(((((......)).))).....((((....)))).....)))))).)).-))......-------------- ( -21.00, z-score = -1.14, R) >droSim1.chr3R 26613323 103 - 27517382 -AGCGCAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUCGGGCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-GCACAAAC-------------- -.((((((...-((....))..............(((((....((((......))))...)))))((((.((((....))))...))))....))))-))......-------------- ( -26.00, z-score = -2.04, R) >droSec1.super_4 5790983 103 - 6179234 -AGCGCAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUCGGGCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-GCACAAAC-------------- -.((((((...-((....))..............(((((....((((......))))...)))))((((.((((....))))...))))....))))-))......-------------- ( -26.00, z-score = -2.04, R) >droYak2.chr3R 27906251 104 - 28832112 CAGCCCAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUCGGGCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-GCACAAAC-------------- ..((((((...-((....))......(((.....)))........)).)))).......((((.(((((((..((.(((...))).))..))).)))-)))))...-------------- ( -27.10, z-score = -2.40, R) >droEre2.scaffold_4820 9456920 103 + 10470090 -AGCCCAGAAA-CGGAAACGAAAUAAGGUUAAAAGCUACUUAAGACUCGGGCAAGUUAAUGUGCCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-GCACGAAC-------------- -.((((((...-((....))...((((...........))))...)).)))).......(((((.((((((..((.(((...))).))..))).)))-)))))...-------------- ( -24.40, z-score = -1.50, R) >droAna3.scaffold_13340 14353623 96 - 23697760 -------GAAA-CGGAAGCGAAAUAAGGUUAAAAGCCACUUAAGACUUGGCCAAGUUAAUGUGCCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-CC-CGAAC-------------- -------....-(((..((((.....(((.....)))...((((((.((((((......)).))))....((((....)))).....))))))))))-.)-))...-------------- ( -19.60, z-score = -0.78, R) >dp4.chr2 30624444 103 + 30794189 -AGCCGAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUCGGCCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-CCACAAAU-------------- -.((((((...-((....))......(((.....)))........))))))........(((((.((((((..((.(((...))).))..))).)))-)))))...-------------- ( -29.60, z-score = -3.75, R) >droPer1.super_7 1489862 103 + 4445127 -AGCCGAGAAA-CGGAAGCGAAAUAAGGUUAAAAGCCACUUAAGACUCGGCCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-CCACAAAU-------------- -.((((((...-((....))......(((.....)))........))))))........(((((.((((((..((.(((...))).))..))).)))-)))))...-------------- ( -27.10, z-score = -2.66, R) >droWil1.scaffold_181108 632086 103 - 4707319 -AGCCAAGAAA-CGGAAACGAAAUAAGGUUAAAAGGCACUUAAGACUAGUGCAAGUUAAUGUGCUACAUAACUCAAGUGAGUCACAUGUUUUAUUGU-CCACAAAU-------------- -((((......-((....))......))))....((((..(((((((((..((......))..)))....((((....)))).....)))))).)))-).......-------------- ( -21.50, z-score = -1.30, R) >droMoj3.scaffold_6540 7075181 117 + 34148556 -AGCGUAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUUGUGCAAGUUAAUGUGGCGCAUAACUCAAGUGAGUCACAUGUUUUAUUGU-GCGCAAAUAGAGAAGCACAGAU -.(((((....-((....)).((((((.......(((((....(((((....)))))...)))))((((.((((....))))...)))))))))).)-)))).................. ( -28.80, z-score = -1.52, R) >droVir3.scaffold_12855 8826826 118 + 10161210 -AGCAAAGAAA-CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUUGUGCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGUGGCACAAAUAGAAAACCAGAAAC -..........-((....))......((((....(((((....(((((....)))))...)))))......((....((.((((((........)))))).))...))..))))...... ( -28.60, z-score = -2.69, R) >droGri2.scaffold_14624 318649 118 + 4233967 -AGCUAAGAAAGCGGAAGCGAAAUAAGGUUAAAAGCCACUUAAGACUUGUGCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUCAUUGU-GCACAAAUGUAGAAGCGCCAAC -.((((((...((....)).......(((.....))).))))....(((((((.....(((((((.(((.......))).))))))).........)-))))))........))...... ( -29.74, z-score = -1.23, R) >consensus _AGCCCAGAAA_CGGAAACGAAAUAAGGUUAAAAGCCACUUAAGACUCGGGCAAGUUAAUGUGGCACAUAACUCAAGUGAGUCACAUGUUUUAUUGU_GCACAAAC______________ ............((....))......(((((...(((((....((((......))))...)))))...)))))...(((....(((........)))..))).................. (-16.60 = -16.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:57 2011