| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,961,140 – 26,961,237 |
| Length | 97 |
| Max. P | 0.786523 |
| Location | 26,961,140 – 26,961,237 |
|---|---|
| Length | 97 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 64.76 |
| Shannon entropy | 0.67097 |
| G+C content | 0.43802 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -9.53 |
| Energy contribution | -10.03 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26961140 97 + 27905053 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUGGCGCUAAAUUGACAGG--CGGAACGACGGGCCUUUGGGCAAAAA----------GGAAAGGGGACUUUU-------- --...((.(((((((.((..((((...))))(((((((((((....))))))))))).--......)).))))))...).))....----------.(((((....)))))-------- ( -26.40, z-score = -1.65, R) >droAna3.scaffold_13340 14341835 90 + 23697760 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCCAAAUUGACAGG--CCGAACGAUGGCCUCCCCUGGGCUUG-----------------GAAUUUUU-------- --......((((((((................(((((((((......)))))))))((--(((.....))))).....))))))))-----------------........-------- ( -26.00, z-score = -1.04, R) >droEre2.scaffold_4820 9445742 96 - 10470090 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGG--CGGAACGACGGGCCUUUGGGGAAAAG-----------AAAAGGGGGCUUUU-------- --.......((((((........(((.(((.(((((((((((....))))))))))).--...)))...)))(((((.........-----------.)))))))))))..-------- ( -23.90, z-score = -0.88, R) >droYak2.chr3R 27894726 107 + 28832112 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGG--CGGAACGACGGGCCUUUGGGGAAAAAAAGGGGGAAAGGAAAGGGGACUUUU-------- --((((((........)))))).(((.(((.(((((((((((....))))))))))).--...)))......(((((........))))))))....(((((....)))))-------- ( -26.00, z-score = -1.30, R) >droSec1.super_4 5779405 96 + 6179234 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGG--CGGAACGACGGGCCUUUGGGGAAAAA-----------GAAAGGGGACUUUU-------- --.......((((((.((..((((...))))(((((((((((....))))))))))).--......)).))))))...........-----------(((((....)))))-------- ( -25.50, z-score = -1.79, R) >droSim1.chr3R 26602117 95 + 27517382 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGG--CGGAACGACGGGCCUUUGGGGAAAUG-----------GAAAGGGACUUUU--------- --.......((((((.(((((..(((((....((((((((((....))))))))))((--(..........))).)))))..))))-----------)...))).)))..--------- ( -23.10, z-score = -0.88, R) >dp4.chr2 30614100 115 - 30794189 --UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGG--CAGACAGCCCGACAGCCCGAAAGCCAGACAGCCACAGCGACAGCGACAUCCACCACUUU --...((((.((((..((..............((((((((((....))))))))))((--(.....))).)).))))(....).......))))..((....))............... ( -28.10, z-score = -2.05, R) >droWil1.scaffold_181108 620389 83 + 4707319 UGUAAUAGCUGGCUCAUCAUUAACUCAGUUAUUGUCAGCUUGGUGCUAAAUUGACAGAACUCGAGUAAAUAUCAAUUUGCUUU------------------------------------ .(((..(((((((....................)))))))...)))................((((((((....)))))))).------------------------------------ ( -15.85, z-score = -0.35, R) >droMoj3.scaffold_6540 7059464 86 - 34148556 --GAAUGAGCGGGCCAUCGUUUACUUAGUUACUGCACGUUUAGUGCCAAAUCGACAGA--CAAUUUGGGCGCAAAUAAGCAGCAAAAAUA----------------------------- --...(((((((....)))))))........((((..((((.(((((((((.(.....--).)))).)))))))))..))))........----------------------------- ( -19.10, z-score = -0.37, R) >droVir3.scaffold_12855 8810328 86 - 10161210 --UAAUGACCAGCUCAUCAUUUACUCAGUUAUUGUACGUUUAGUGCCAAAUUGACAGA--CAAUUUGUGCGCAAAUAACGAGCAAAAAUA----------------------------- --.........((((............((......))(((..(((((((((((.....--))))))).))))....))))))).......----------------------------- ( -19.10, z-score = -2.15, R) >consensus __UAAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGG__CGGAACGACGGGCCUUUGGGGAAAAA____________AAAGGGGACUUUU________ ..((((((........)))))).........(((((((((((....))))))))))).............................................................. ( -9.53 = -10.03 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:54 2011