| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,955,892 – 26,955,973 |
| Length | 81 |
| Max. P | 0.580294 |
| Location | 26,955,892 – 26,955,973 |
|---|---|
| Length | 81 |
| Sequences | 9 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 68.63 |
| Shannon entropy | 0.63088 |
| G+C content | 0.51303 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -8.87 |
| Energy contribution | -8.00 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.83 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26955892 81 + 27905053 -GUAGGGAUUGUGCGACAGCUGACCAUCUGCAUCCACGCAGAGGAGGAAGCGCAAGUUCUUCAGGUGGCAGUAGUCCAGACA -((..(((((((((.((..((((((.(((((......))))))).((((.(....))))))))))).))).))))))..)). ( -30.90, z-score = -2.50, R) >droSim1.chr3R_random 1272737 81 + 1307089 -GUAGGGAUUGUGCGACAGCUGGCCAUCUGCGUCCACGCAGAGGAGGAAGCGCAAGUUCUUCAGGUGGCAGUAGUCCAGACA -((..(((((((((.((.........((((((....)))))).((((((.(....)))))))..)).))).))))))..)). ( -33.40, z-score = -2.75, R) >droSec1.super_4 5774250 81 + 6179234 -GUAGGGAUUGUGCGACAGCUGACCAUCUGCGUCCACGCAGAGGAGGAAUCGCAAGUUCUUCAGGUGGCAGUAGUCCAGACA -((..(((((((((.((..((((((.((((((....)))))))).((((.(....))))))))))).))).))))))..)). ( -33.50, z-score = -3.25, R) >droYak2.chr3R 27889557 81 + 28832112 -GUAGGGAUUGUGCGACAGCUGACCAUCUGCAUCCACGCAGAGCAGGAAUCGCAGGUUCUUCAGGUGGCAGUAGUCCAGGCA -((..(((((((((.((..(((....(((((......))))).)))((((.....)))).....)).))).))))))..)). ( -28.30, z-score = -1.23, R) >droEre2.scaffold_4820 9438579 81 - 10470090 -GUAGGGAUUGUGCGACAACUGACCAUCCGCAUCCACGCAGAGGAGGAAGCGCAAGUUCUUCAGGUGGCAGUAGUCCAGGCA -((..(((((((((.((..((((((.((.((......)).)))).((((.(....))))))))))).))).))))))..)). ( -26.60, z-score = -1.17, R) >droAna3.scaffold_13340 14336664 81 + 23697760 -CCAGGGAUUCUUUACGAGCUUAUCGUCUUCGUCCUUGCAGAGCAAGUACGGAAUAUAUUUUAGGUGACAGAAAUCCGAACA -...(((.((((..((((.....)))).(((((.(((((...))))).)))))..........(....))))).)))..... ( -18.80, z-score = -0.93, R) >dp4.chr2 30608185 81 - 30794189 CGCCGGG-CUACUCGCAAACUGAUUGUUGUCGUCGAUGCAGGGCAGGAACGGAAUGAAUCUGAAGUGGCAAUAAUCCAGGCA .(((..(-(.....)).....(((((((((((((.......))).....((((.....))))....))))))))))..))). ( -22.50, z-score = -0.03, R) >droPer1.super_7 1473678 81 - 4445127 CGCCGGG-CUACUCGCAAACUGAUUGUUGUCGUCGAUGCAUGGCAGGAACGGAAUGAAUCUGAAGUGGCAAUAAUCCAGGCA .(((..(-(.....)).....((((((((((((((.....)))).....((((.....))))....))))))))))..))). ( -22.40, z-score = -0.08, R) >droWil1.scaffold_181108 614502 81 + 4707319 -UAUUGGAUUAUCUGCAUAUUGUCCAUUUUGUUGCAAACAAGGAAAAUAUCGAAAGUAUUCUAAAUGACAGAGAUCCAAACA -..(((((((.(((((((....(((...((((.....))))))).((((.(....)))))....))).)))))))))))... ( -17.40, z-score = -2.16, R) >consensus _GUAGGGAUUGUGCGACAGCUGACCAUCUGCGUCCACGCAGAGCAGGAACCGCAAGUUCUUCAGGUGGCAGUAGUCCAGACA .((..(((((........((((.(((((....((......)).((((((.......)))))).))))))))))))))..)). ( -8.87 = -8.00 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:54 2011