| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,895,030 – 26,895,146 |
| Length | 116 |
| Max. P | 0.582809 |
| Location | 26,895,030 – 26,895,146 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.64 |
| Shannon entropy | 0.45839 |
| G+C content | 0.55976 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -23.11 |
| Energy contribution | -26.54 |
| Covariance contribution | 3.43 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26895030 116 + 27905053 CAUCUCAGUGUGUGCUUCUGGCGGCACUGGGAAUCCUGUGGCCGCUGUUUCCAUGGCGGGA-ACACCCACGCGAUUAUUUCUCGGAUGCCGAAGUCUACCGGAUAUCCUGUGCUGAA-- ....((((((((((.....((((((((.((....)).)).))))))((((((.....))))-))...)))))...........((((((((........))).)))))...))))).-- ( -41.70, z-score = -1.26, R) >droAna3.scaffold_13340 14273777 96 + 23697760 -------------GAUUUGAUUGACAUAGAGAAUCCUGUGG----------CAUGGAAGAAGACACCCACGCGAUUAUUCCUCGGUUUCCGCCGUCCCACGGAUAUCCUCCGUUCAGAA -------------..(((((..(((...(((((((.(((((----------..((........)).))))).))))....)))(((....))))))..(((((.....)))))))))). ( -23.20, z-score = -0.19, R) >droEre2.scaffold_4820 9382912 113 - 10470090 CAUUUCAGUGUGCA---CUGGCGGCACUGGGAAUCCUGUGGUCGCAGUUUCCGUGACGGGA-ACACCCACGCGAUUAUUCCUAGGAUGCCGAAGUCUACCGGAUUUCCCGUGCUGAA-- ...(((((..((..---..((((...((((((((..(((((((((.......)))))(((.-...))).))))...))))))))..))))((((((.....)))))).))..)))))-- ( -43.80, z-score = -2.23, R) >droYak2.chr3R 27835100 104 + 28832112 CAUCUCAGUGUGUGUUUCUGGCGGCACUGGGAAUCCUGUGGCCGCCGUUUCCAUGGCGGGA-ACACCCACGCGAUUAUUCCUCGAAUGCCGAAGUCUGCCGGAUU-------------- ................((((((((.((((((((((.((((((((((((....)))))))..-....))))).)))..))))(((.....))))))))))))))..-------------- ( -36.50, z-score = -0.59, R) >droSec1.super_4 5719446 116 + 6179234 CAUCUCGGUGCGUUUUUCUGGCGGCACUGGGAAUCCUGUGGCCGCUGUUUCCAUGGCGGGA-ACACCCACGCGAUUAUUCCUCGGAUGCCGAAGUCUACCGGAUUUCCCGUGCUGAA-- ....((((..((....(((((((((((((((((((.(((((....(((((((.....))))-))).))))).)))...))).))).))))).......))))).....))..)))).-- ( -44.01, z-score = -1.50, R) >droSim1.chr3R 26543394 116 + 27517382 CAUCUCGGUGCGUGUUUCUGGCGGCACUGGGAAUCCUGUGGCCGCUGUUUCCAUGGCGGGA-ACACCCACGCGAUUAUUCCUCGGAUGCCGAAGUCUACCGGAUUUCCCGUGCUGAA-- ....((((..((.(..(((((((((((((((((((.(((((....(((((((.....))))-))).))))).)))...))).))).))))).......)))))...).))..)))).-- ( -44.81, z-score = -1.44, R) >consensus CAUCUCAGUGUGUGUUUCUGGCGGCACUGGGAAUCCUGUGGCCGCUGUUUCCAUGGCGGGA_ACACCCACGCGAUUAUUCCUCGGAUGCCGAAGUCUACCGGAUUUCCCGUGCUGAA__ ....((((..((....(((((((((((((((((((.((((((((((((....))))))).......))))).))))....))))).))))).......))))).....))..))))... (-23.11 = -26.54 + 3.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:51 2011