| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,874,241 – 26,874,345 |
| Length | 104 |
| Max. P | 0.623847 |
| Location | 26,874,241 – 26,874,345 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 69.78 |
| Shannon entropy | 0.51261 |
| G+C content | 0.38738 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -10.42 |
| Energy contribution | -10.30 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26874241 104 + 27905053 UGCUUUGGACUGCGGGAUAUCCUGUAGUUG-GAUAUCGUUGCCAUUAGAAGAUACUUUAUAAGUGCAUCGUA-UGGGUAUAACACUUUUACACAUAGUAAUCCAUA .......(((((((((....)))))))))(-(((...((((((((..((.(.((((.....))))).))..)-)))...)))).....(((.....)))))))... ( -24.20, z-score = -0.54, R) >droEre2.scaffold_4820 9362018 89 - 10470090 GGCUUUGGACUGUGGGAUAUCCUAUAGUGG-GCUGUGAUUCCAAUCGGAAGGUAAUUGUUAAAUGCAUUGCAAUGGGUAUUGCAAUUUAC---------------- (((((...((((((((....))))))))))-)))(..((((((..(....)(((((.((.....)))))))..)))).))..).......---------------- ( -25.00, z-score = -1.82, R) >droYak2.chr3R 27813486 91 + 28832112 AGCUUUGGACUGUGCGAUAUCCUGUAGUAAUGAUUUGAUUUUAAUUGGAAGGUAAUUGGUAAAUGCAUGCUAGUGGGUAUUACAAUUUUGC--------------- ............((..((((((..(((((.(((((((....((((((.....)))))).))))).)))))))..))))))..)).......--------------- ( -15.40, z-score = 0.62, R) >droSec1.super_4 5698962 88 + 6179234 GGCUACGGACUGCGGGAUAUCCUGUAGUUG-GAUAUCAUUGCCAUUAGUAGAUACUUAAUA--CCCAUAGUAAUGGGUAUGACACUAUUAC--------------- ((((((.(((((((((....))))))))).-).)).....)))..((((((.......(((--(((((....))))))))....)))))).--------------- ( -29.50, z-score = -3.19, R) >droSim1.chr3R 26521255 96 + 27517382 GGCUAUGGACUGCGGGAUAUCCUGUAGUUG-GAUAUCAUUGCCAUUAGUAGGUACUUUAUA--CCCAUUGUAAUGGGUAUGACACUUUUGCUAUUUUAU------- (((.((((((((((((....))))))))).-.....))).)))..(((((((....(((((--(((((....))))))))))....)))))))......------- ( -34.70, z-score = -4.13, R) >consensus GGCUUUGGACUGCGGGAUAUCCUGUAGUUG_GAUAUCAUUGCCAUUAGAAGGUACUUGAUAA_UGCAUUGUAAUGGGUAUGACACUUUUAC_______________ .......(((((((((....)))))))))......((((..((((((.......................))))))..))))........................ (-10.42 = -10.30 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:48 2011