| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,850,495 – 26,850,603 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 26,850,495 – 26,850,603 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.05 |
| Shannon entropy | 0.36014 |
| G+C content | 0.34426 |
| Mean single sequence MFE | -28.09 |
| Consensus MFE | -12.40 |
| Energy contribution | -16.65 |
| Covariance contribution | 4.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 26850495 108 + 27905053 AAGAAGUAAAGUUGGGUAGUUAGAGAGACGUGGUUGUGUAAAACAUACUUACUAAUACCACCGGCUACUUUAACUACUUCUAAGCCCAAAACUUGUAUAGUUUUGUUU ..........(((.(((((((((((((..(((((...((((.......))))....)))))...)).)))))))))))....))).(((((((.....)))))))... ( -28.10, z-score = -1.66, R) >droSim1.chr3R 26495214 107 + 27517382 AAGAAGUAAGGUUGGGGAGUUAGAGAGACGUGGUUUUGUAAAACAUUUUUACUAAAACCACCGGUAACUUUAA-UACUUCUGAGCCCAAAGCUUGUAUAGUUUUGUUU .........((((.(((((((((((..(((((((((((((((.....))))).))))))))..))..))))).-.)))))).))))(((((((.....)))))))... ( -32.80, z-score = -3.36, R) >droSec1.super_4 5674925 107 + 6179234 AAGAAGUAAGGUUGGGGAGUUAGAGAGACGUGGUUUUGUAAAACAUUUUUACUAAAACCACCGGUUACUUUAA-UACUUCGGAGCCCAAAGCUUGUAUAGUUUUGUUU .........((((((((.(((((((.((((((((((((((((.....))))).))))))))..))).))))))-).)))))..)))(((((((.....)))))))... ( -30.60, z-score = -2.58, R) >droEre2.scaffold_4820 9335054 108 - 10470090 AAGAUGAAAAGUUUCAGAGUUACAUAGCAGUGAUUUUGUUAAACUAGGAUAAGACCAACACAAAACCCUACUACUUAUUCUAAACACAAAGCUUGUGUAUUUUUGUUU .(((..(((((((((((((((((......)))))))))..))))(((((((((....................))))))))).(((((.....))))).))))..))) ( -20.85, z-score = -1.33, R) >consensus AAGAAGUAAAGUUGGGGAGUUAGAGAGACGUGGUUUUGUAAAACAUUUUUACUAAAACCACCGGUUACUUUAA_UACUUCUAAGCCCAAAGCUUGUAUAGUUUUGUUU .........((((.((((((...((((..(((((((((((((.....))))).))))))))......))))....)))))).))))(((((((.....)))))))... (-12.40 = -16.65 + 4.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:47 2011