| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,833,165 – 26,833,259 |
| Length | 94 |
| Max. P | 0.928000 |
| Location | 26,833,165 – 26,833,259 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 86.24 |
| Shannon entropy | 0.21308 |
| G+C content | 0.55251 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -20.73 |
| Energy contribution | -21.10 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.928000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26833165 94 + 27905053 UAAGGCGCACGUAAAACGGCGCAAAUUCCUAAAUAACAGAGGGGCAUUCGUGGGGAGACGCAGGACAUUAGGGGACGGGUGCAUCGAAGGGAGG--- ....((((.((.....))))))...(((((........((...((((((.((.(....).))........(....))))))).))...))))).--- ( -26.70, z-score = -3.35, R) >droSim1.chr3R 26478011 88 + 27517382 UAAGGCGCACGUAAAACUGCGCGAAUUCCUAAAUAGCAGAGGGGCAUUCGUGGGGAG------GACAUUAGGGAACGGGUGCAUCUGAGGGAGG--- ....(((((........)))))...(((((......((((...((((((((......------...........)))))))).)))).))))).--- ( -25.53, z-score = -2.30, R) >droSec1.super_4 5657771 88 + 6179234 UAAGGCGCACGUAAAACUGCGCGAAUUCCUAAAUAGCAGAGGGGCAUUCGUGGGGAG------GACAUUAGGGAACUGGUGCAUCUGAGGGAGG--- ..((..((((((....((.(((((((((((..........)))).))))))).))..------.))..(((....)))))))..))........--- ( -24.00, z-score = -1.43, R) >droEre2.scaffold_4820 9317133 97 - 10470090 UAAGGCGCACGUAAAACUGCGCGAAUUCCUAAAUAGCAGAGGGGCAUUUGUGGAGAGACGCAGGACUUCAGGGGGCAGGUGCAUCUGAGGGGGCGGG .....(((........((((((...(((((((((.((......))))))).)))).).)))))..(((((((..((....)).)))))))..))).. ( -30.70, z-score = -2.04, R) >consensus UAAGGCGCACGUAAAACUGCGCGAAUUCCUAAAUAGCAGAGGGGCAUUCGUGGGGAG______GACAUUAGGGAACGGGUGCAUCUGAGGGAGG___ ....(((((........)))))...(((((......((((...((((((((.......................)))))))).)))).))))).... (-20.73 = -21.10 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:46 2011