| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,818,896 – 26,818,998 |
| Length | 102 |
| Max. P | 0.849325 |
| Location | 26,818,896 – 26,818,998 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.08 |
| Shannon entropy | 0.38921 |
| G+C content | 0.50253 |
| Mean single sequence MFE | -33.94 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.17 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26818896 102 - 27905053 GUAAUUGAGGCAUACAAA-------GGUAGAAAGUCGGAUAUCGGAGGUGG---UUGUAAUGG----GAAGCACUUGAGAGCCACUUGCGAGCCGAGAAUUAGCCUCAGAGCUAGU-- ....(((((((.(((...-------.))).....((((...(((.((((((---((.(...((----......))..).)))))))).))).))))......))))))).......-- ( -35.90, z-score = -3.95, R) >droSim1.chr3R 26463392 94 - 27517382 GUAAUUGAGGCAUAC---------------AAAGUCGGAUAUCGGAGGUGG---UUGUAAUGG----GAAGCACUUGAGAGCCACUUGCGAGCCGAGAAUUAGCCUCAGAGCGACA-- ....(((((((....---------------....((((...(((.((((((---((.(...((----......))..).)))))))).))).))))......))))))).......-- ( -33.64, z-score = -3.57, R) >droSec1.super_4 5643863 94 - 6179234 GUAAUUGAUGCAUAC---------------AAAGUCGGAUAUCGGAGGUGG---UUGUAAUGG----GAAGCACUUGAGAGCCACUUGCGAGCCGAGAAUUAGCCUCGGAGCGACA-- ...............---------------...((((....(((.((((((---((.(...((----......))..).)))))))).))).(((((.......)))))..)))).-- ( -30.30, z-score = -2.23, R) >droYak2.chr3R 27754412 105 - 28832112 GUAAUUGAGGCGUACGAG------UCGUACAAAGUCGGAUAUCGGAGGUGG---UUGUAAUGG----GUAGCACUUGAGAGCCACUUGCGAGCCGAGAAUUAGCCACCGAGUCGCUCA ........((((((((..------.)))))....((((...(((.((((((---((.(...((----......))..).)))))))).))).))))......)))...(((...))). ( -35.30, z-score = -1.67, R) >droEre2.scaffold_4820 9302819 102 + 10470090 GUAAUUGGGGUAUACGAG-------GGUACAAAGUCGGAUAUCGGAGGCGG---UUAUAAUGG----GAAGCACUUCAGAGCCACUUGCGAGCCGAGCAUUAGCCUCUGAGCGACU-- (((.(((.......))).-------..)))..(((((....((((((((((---((....(((----(......)))).))))...(((.......)))...)))))))).)))))-- ( -30.10, z-score = -0.71, R) >droAna3.scaffold_12911 1242981 116 + 5364042 GUAAUUGAGGCGCAUAUGCAUCAUUCUUUGGCGAACGGAUAUCGGAGGUGGGCUCUGCAGGGGUGUAAAAGCACUUGAGAGCCACUUGCUAGCCAUGAAUUAGCCUCUGAACAACU-- ......(((((((....))...((((..((((((.......))(.((((((.((((.((((.((......)).)))))))))))))).)..)))).))))..))))).........-- ( -38.40, z-score = -1.50, R) >consensus GUAAUUGAGGCAUAC_AG________GUA_AAAGUCGGAUAUCGGAGGUGG___UUGUAAUGG____GAAGCACUUGAGAGCCACUUGCGAGCCGAGAAUUAGCCUCAGAGCGACU__ ......(((((.......................((((...(((.((((((......(((.(...........))))....)))))).))).))))......)))))........... (-16.94 = -17.17 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:45 2011