| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,813,583 – 26,813,673 |
| Length | 90 |
| Max. P | 0.965245 |
| Location | 26,813,583 – 26,813,673 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.04 |
| Shannon entropy | 0.04081 |
| G+C content | 0.37407 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -19.55 |
| Energy contribution | -19.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26813583 90 + 27905053 GUCAGCAAUUCAGCAAAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGAAUUGUACUAAAUAAGUAAACUUU ....(((((((.......(((..(((((((.......)))))))..)))(((.....))).....))))))).................. ( -23.20, z-score = -3.07, R) >droSim1.chr3R 26458040 90 + 27517382 GUCAGCAAUUCAGCAUAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGGAAUGUAAUAAAUAAGUAAACUUU .((.((......))...((((..(((((((.......)))))))..))))...))(((((.......))))).................. ( -19.70, z-score = -1.72, R) >droSec1.super_4 5638528 90 + 6179234 GUCAGCAAUUCAGCAAAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGAAAUGUAAUAAAUAAGUAAACUUU .((.((......))...((((..(((((((.......)))))))..))))...))((.(((((((....).))))))....))....... ( -19.70, z-score = -2.18, R) >consensus GUCAGCAAUUCAGCAAAUGACAGGAUACCCCAAUUUCGGGUGUCUCGUCAACAGAACGUUAUUGAGAAAUGUAAUAAAUAAGUAAACUUU ....(((.(((.......(((..(((((((.......)))))))..)))(((.....))).....))).))).................. (-19.55 = -19.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:44 2011