Locus 12253

Sequence ID dm3.chr3R
Location 26,812,375 – 26,812,467
Length 92
Max. P 0.565323
window16852

overview

Window 2

Location 26,812,375 – 26,812,467
Length 92
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 93.35
Shannon entropy 0.11661
G+C content 0.52041
Mean single sequence MFE -32.19
Consensus MFE -24.86
Energy contribution -25.38
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -2.04
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.15
SVM RNA-class probability 0.565323
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 26812375 92 - 27905053
CAUGAAUAUGGAGAGGACCAGCAGAAUUGCUUU---GGCUGCCCGAGGCCCCGAAAAGUUGGUAAUUCCAGCAUGUGGACCAAGUUGCGGUCCAA
((((....(((((...((((((......(((((---((....)))))))........))))))..))))).))))((((((.......)))))). ( -33.34, z-score =  -2.50, R)
>droEre2.scaffold_4820 9296290 92 + 10470090
AAUGAAUAUGGAGUGGACCAGCAGAAUGGCUUU---GGCUGCCCGAGGUCCCGAAAAGUUGGUAAUUCCAGCAUGUGGACCAAGUUGCGGUCCAA
.(((....((((((..((((((.....((((((---((....)))))))).......)))))).)))))).))).((((((.......)))))). ( -34.00, z-score =  -2.51, R)
>droYak2.chr3R 27747732 95 - 28832112
CAUGAAUAUGGAGUGGGACCGCAGAAUUGCUUUGCAGGCAGCCCGAGGCACCGAAAAGUUGGUAAUGCCAGCAUGUGGACCAAGUUGCGGUCCAA
...............(((((((((.....((.(((.(((((((...)))(((((....)))))..)))).)))...))......))))))))).. ( -34.70, z-score =  -1.91, R)
>droSec1.super_4 5637363 92 - 6179234
CAUGAAUAUGGAGAGGACCAGCAGAAUUGCUUU---GGCUGCCCGAGGCCCCGAAAAGUUGGUAAUUCCAGCAUGUGGACCAAGUUGCCGUCCAA
((((....(((((...((((((......(((((---((....)))))))........))))))..))))).))))(((((.........))))). ( -28.94, z-score =  -1.49, R)
>droSim1.chr3R 26456864 92 - 27517382
CAUGAAUAUGGAGAGGACCAGUAGAAUUGCUUU---GGCUGCCCGAGGCCCCGAAAAGUUGGUAAUUCCAGCAUGUGGACCAAGUUGCGGUCCAA
((((....(((((...(((((.......(((((---((....))))))).........)))))..))))).))))((((((.......)))))). ( -29.99, z-score =  -1.81, R)
>consensus
CAUGAAUAUGGAGAGGACCAGCAGAAUUGCUUU___GGCUGCCCGAGGCCCCGAAAAGUUGGUAAUUCCAGCAUGUGGACCAAGUUGCGGUCCAA
((((....(((((...((((((......(((.....))).(((...)))........))))))..))))).))))((((((.......)))))). (-24.86 = -25.38 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:42 2011