| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,785,105 – 26,785,240 |
| Length | 135 |
| Max. P | 0.664629 |
| Location | 26,785,105 – 26,785,240 |
|---|---|
| Length | 135 |
| Sequences | 8 |
| Columns | 152 |
| Reading direction | reverse |
| Mean pairwise identity | 63.36 |
| Shannon entropy | 0.74859 |
| G+C content | 0.50229 |
| Mean single sequence MFE | -37.05 |
| Consensus MFE | -12.12 |
| Energy contribution | -12.89 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26785105 135 - 27905053 UUCCACAAUGGCCGAAAGAUAAAUGA-UUUGGCCAGCAUUU---UAUUUGA--GCCAGUCCCAGUGACGCCUCGUCCUGGCA------AAGGACGCACACAUCCUAAAUUCGUCACACGGCUGCUGGUC---CUUCCAUUAGU--GUCCUUC ........((((((((..........-))))))))(((((.---.....(.--.(((((.((.((((((((.......))).------.((((........))))......)))))..))..)))))..---).......)))--))..... ( -38.02, z-score = -1.57, R) >droSim1.chr3R 26429385 135 - 27517382 UUCCACAAUGGCCGAAAGAUAAAUGA-UUUGGCCAGCAUUU---UAUUUGG--GCCAGUCCCAGUGACGCCUCGUCCUAGCA------AAAGACGCACACAUCCUGAAUUCGUCACACGGCUGCUGGUC---CUUCCAUUAGU--GUCCUUC ........((((((((..........-))))))))(((((.---.....((--((((((.((.((((((...((((......------...))))..((.....))....))))))..))..)))))))---).......)))--))..... ( -37.02, z-score = -1.28, R) >droSec1.super_4 5610135 135 - 6179234 UUCCACAAUGGCCGAAAGAUAAAUGA-UUUGGCCAUCAUUU---UAUGUGG--GCCAGUCCAAGUGACGCCUCGUCCCGGCA------AAGGACGCACACAUCCUGAAUUCGUCACACGGCUGCUGGUC---CUUCCAUUAGU--GUCCUUC ...(((.(((((((((..........-))))))))).....---.....((--((((((((..((((((((.......))).------.((((........))))......)))))..))..)))))))---)........))--)...... ( -43.20, z-score = -1.96, R) >droYak2.chr3R 27712296 141 - 28832112 UUCCACAAUGGCCGAAAGAUAAAUGA-UUUCGCCGGCAUUU---UAUUUGG--GCCAGUCCCAGUGACGCCUCGUUCUGGCAGCGCACGAGGACACACACAUCCUGAAUUCGUCACACGGCUGCUGGUC---CUUCCAUUAGU--GUCCUGC .........(((.((((.........-)))))))((((((.---.....((--((((((.((.((((((((.......)))........((((........))))......)))))..))..)))))))---).......)))--))).... ( -41.92, z-score = -0.53, R) >droEre2.scaffold_4820 9266803 135 + 10470090 UUCCACAAUGGCCGAAAGAUAAAUGA-UUUGGCCGGCAUUU---UGUUUGG--GCCAGUCCCAGUGACGCCUCGUCCUGGCA------AAGGACGCAUACAUCCUGAAUUCGUCACACGGCUGCUGGUC---CUUCCAUUAGU--GUCCUGC .........(((((((..........-)))))))((((((.---((...((--((((((.((.((((((((.......))).------.((((........))))......)))))..))..)))))))---)...))..)))--))).... ( -45.70, z-score = -1.65, R) >droAna3.scaffold_12911 1206252 127 + 5364042 -UUGAGCAUGGCCCAAAGAUAAAUGAUUUUGGCCGGCGGUCCGACAUUUGGCUGCCAGUCCGAGUGACGCCU------------------------AGAAAUCCCAAAUUCGUCACAUGGCUGCUGGUCGGGCUCCCUUACGUGGGUCCUGC -....(((.((((((....(((..((.((((((((((((.(((....(((((.....).))))((((((...------------------------..............)))))).))))))))))))))).))..)))..)))))).))) ( -44.23, z-score = -0.60, R) >dp4.chr2 30416116 108 + 30794189 UUCUCCCUCCACUCAAAGAUAAAUGA-UUUGGC--------------------GCCAGUCCGUGUGACGUCUGUCCUU----------------UCUCCCGCUUUCAG--CCUCACACGGGUCCUGGUC---CAACUCUGAAU--GUCCGUC .................((((...((-.((((.--------------------((((((((((((((.(.(((.....----------------...........)))--).)))))))))..))))))---))).))....)--))).... ( -29.89, z-score = -2.72, R) >droMoj3.scaffold_6540 6811861 122 + 34148556 --CCACAGAUACAAACUAAUUAAAGA-UUCGGUUCUUAUCC---UGACCAA-GGCGAGUCACAAAUAUUUCUAGCUAAAAGCUUUUUGGCCAACAGUCACAGCCAUAAACUAUAGCAUAUAUAUACAUG----------------------- --......................((-((((........((---(.....)-)))))))).............((((..((.(((.((((...........)))).))))).)))).............----------------------- ( -16.40, z-score = -0.01, R) >consensus UUCCACAAUGGCCGAAAGAUAAAUGA_UUUGGCCAGCAUUU___UAUUUGG__GCCAGUCCCAGUGACGCCUCGUCCUGGCA______AAGGACGCACACAUCCUGAAUUCGUCACACGGCUGCUGGUC___CUUCCAUUAGU__GUCCUUC ........(((((.................)))))..................((((((((..((((((.........................................))))))..))..))))))........................ (-12.12 = -12.89 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:39 2011