| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,773,063 – 26,773,201 |
| Length | 138 |
| Max. P | 0.876246 |
| Location | 26,773,063 – 26,773,201 |
|---|---|
| Length | 138 |
| Sequences | 5 |
| Columns | 139 |
| Reading direction | forward |
| Mean pairwise identity | 82.32 |
| Shannon entropy | 0.31590 |
| G+C content | 0.39136 |
| Mean single sequence MFE | -31.74 |
| Consensus MFE | -23.27 |
| Energy contribution | -22.91 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26773063 138 + 27905053 AAAAGAUUGAUUU-UGACCCUAGUUCUAUUUAUUCCAUAUUUGCAGAGGCAUUGAUAACCGAAUCAGAAAAGCUUUGAGCAAGUGGCCAAAUAUGCAAAGCUUAACUGAUUUGGAAUGCAGCUUAAUCCACAUGAUACG ....((((((...-.(((....))).................((....(((((.....(((((((((..(((((((..(((.((......)).))))))))))..)))))))))))))).))))))))........... ( -28.10, z-score = -0.56, R) >droEre2.scaffold_4820 9254714 135 - 10470090 ----GUUUGAUCUCUGUCCCCAACUCCCUUUAUUCCAUAUUAGCCGAGGCAUUGAUAACCAAAUCAGAAAAGCUUUGAGCAUGUGGCCAAAUAUGCAAAGCUUAACUGAUUGGGAAUGCAGUUUAAUCCGCUUGAUACG ----..((((...((((.(((................(((((((....))..)))))....((((((..(((((((..((((((......)))))))))))))..)))))))))...)))).))))............. ( -30.20, z-score = -0.80, R) >droYak2.chr3R 27699872 117 + 28832112 ----------------------AAACGAUUGAUGUUGACAAUGCCGAGGCAUUGAUAACCGAAUCGGAAAAGCUUUGAGCAAGUGGCCAAAUAUGCAGAGCUUAACUGAUUUGGAAUGCAGUUUAAUCCGCUUGAUACG ----------------------....(((((((((...((((((....))))))....(((((((((..(((((((..(((.((......)).))))))))))..)))))))))...)))..))))))........... ( -34.00, z-score = -2.98, R) >droSec1.super_4 5598626 138 + 6179234 AAACGAUUGAUCU-GGACCCUAGCUCUUUUUAUUCCAUAUUUGCCGAGGCAUUAAUAACCGAAUCAGAAAAGCUUUGAGAAAUUGGCCAAAUAUGCAAAGCUUAACUGAUUUGGAAUGCAGCUUAAUCCACAUGAUACG ...((..(.((.(-(((....((((................(((....))).......(((((((((..((((((((....(((.....)))...))))))))..))))))))).....))))...)))).)).)..)) ( -33.10, z-score = -2.53, R) >droSim1.chr3R 26417387 138 + 27517382 AAACGAUUGAUCU-GGACCCUAGCUCUUUUUAUUCCAUAUUUGCCGAGGCAUUGAUAACCGAAUCAGAAAAGCUUUGAGAAAUUGGCCAAAUAUGCAAAGCUUAACUGAUUUGGAAUGCAGCUUAAUCCACAUGAUACG ...((..(.((.(-(((....((((............(((((((....)))..)))).(((((((((..((((((((....(((.....)))...))))))))..))))))))).....))))...)))).)).)..)) ( -33.30, z-score = -2.36, R) >consensus AAA_GAUUGAUCU_GGACCCUAGCUCUAUUUAUUCCAUAUUUGCCGAGGCAUUGAUAACCGAAUCAGAAAAGCUUUGAGCAAGUGGCCAAAUAUGCAAAGCUUAACUGAUUUGGAAUGCAGCUUAAUCCACAUGAUACG ..........................................((....(((((.....(((((((((..((((((((..................))))))))..)))))))))))))).))................. (-23.27 = -22.91 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:38 2011