| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,760,619 – 26,760,709 |
| Length | 90 |
| Max. P | 0.952270 |
| Location | 26,760,619 – 26,760,709 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 89.29 |
| Shannon entropy | 0.21445 |
| G+C content | 0.37031 |
| Mean single sequence MFE | -19.62 |
| Consensus MFE | -17.94 |
| Energy contribution | -17.95 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26760619 90 - 27905053 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAACACAAAGACAC---------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....))))....-)).................---------------------- ( -18.80, z-score = -2.05, R) >droMoj3.scaffold_6540 3994008 91 + 34148556 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCC-AAAAAGCACUCGACACACACAGAGG--------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....)))-)....)).(((..........))).--------------------- ( -20.80, z-score = -2.06, R) >droVir3.scaffold_13047 11614925 88 - 19223366 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAAAGCACUCGACACACACU------------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....)))).....))..............------------------------- ( -19.20, z-score = -2.00, R) >droWil1.scaffold_181130 10353863 92 - 16660200 GCGAAUAUGGUGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAAGGCACUCCACAGAGAAGAACU--------------------- (((((..((((...((....)).........((((((....))))))))))..))))).....(((.....))).(((....))).......--------------------- ( -19.30, z-score = -1.03, R) >droPer1.super_7 1256318 90 + 4445127 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAACACAAAGACAC---------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....))))....-)).................---------------------- ( -18.80, z-score = -2.05, R) >dp4.chr2 30389652 90 + 30794189 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAACACAAAGACAC---------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....))))....-)).................---------------------- ( -18.80, z-score = -2.05, R) >droAna3.scaffold_12911 1177809 112 + 5364042 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAAUGGCAAAAGGUUGGAGGAAAAGAGAAAGCCAUG .....((((((.(((((((....)))...((((((((....)))))))).....)))).(((((((.....-((.(.....)))....)))))))............)))))) ( -25.10, z-score = -0.61, R) >droEre2.scaffold_4820 9242406 90 + 10470090 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAACACAAAGACAC---------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....))))....-)).................---------------------- ( -18.80, z-score = -2.05, R) >droYak2.chr3R 27687198 90 - 28832112 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAU-GCACUCAACACAAAGACAC---------------------- (((....((((.(((((((....)))...((((((((....)))))))).....)))).....))))...)-)).................---------------------- ( -18.60, z-score = -1.78, R) >droSec1.super_4 5586661 86 - 6179234 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAACACAAAG-------------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....))))....-)).............-------------------------- ( -18.80, z-score = -2.11, R) >droSim1.chr3R 26405232 90 - 27517382 GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUAUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA-GCACUCAACACAAAGACAC---------------------- ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....))))....-)).................---------------------- ( -18.80, z-score = -2.69, R) >consensus GCGAAUAUGGCGGCGAUAAUUCUUUAAAAAUUGGAAAUUGUUUUCCAAUCGAUUUCGCAUUUAGCCAAAAA_GCACUCAACACAAAGACAC______________________ ((.....((((.(((((((....)))...((((((((....)))))))).....)))).....)))).....))....................................... (-17.94 = -17.95 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:37 2011