| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,750,455 – 26,750,552 |
| Length | 97 |
| Max. P | 0.801006 |
| Location | 26,750,455 – 26,750,552 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 84.07 |
| Shannon entropy | 0.28968 |
| G+C content | 0.52162 |
| Mean single sequence MFE | -39.09 |
| Consensus MFE | -27.79 |
| Energy contribution | -27.10 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26750455 97 - 27905053 AAUGGCCGCAUAAUGUGGCAACCAAGCUGGCGGAAU--------CUGGCGUUUGUUUGCCGUUUGCGGCUUGGUUGGCAAUUAAUUCGAGCAUCAG-CGCGGUAAU ....(((((.((((.((.(((((((((((.((((..--------.(((((......)))))))))))))))))))).))))))......((....)-))))))... ( -40.30, z-score = -2.49, R) >droAna3.scaffold_12911 1167130 95 + 5364042 AAUGGCCACAUAAUGUGGCAGCCGGAGAUGCGU-----------UUGUUUGCCGUUUGCUGUUUGCGGCUUGGCUGGCAAUUAAUUUGCGCUUCAGUUUUGAUAAU ....(((((.....)))))(((.((((.((((.-----------(((.((((((((.((((....))))..))).))))).)))..)))))))).)))........ ( -31.60, z-score = -1.04, R) >droEre2.scaffold_4820 9232294 97 + 10470090 AAUGGCCGCAUAAUGUGGCAACCGAGCUGCCGGAAU--------CCGGCGUUUGUUUGCCGUUUGCGGCUUGGUUGGCAAUUAAUUCGAGCAUCAG-CGCCGUAAU .(((((((.......((.((((((((((((....(.--------.(((((......)))))..))))))))))))).)).......)).((....)-))))))... ( -39.14, z-score = -1.70, R) >droYak2.chr3R 27675643 105 - 28832112 AAUGGCCGCAUAAUGUGCCAACCGAGCUGCCGGAAUCCGGAUUGCCGGCGUUUGUUUGCCGUUUGCGGCUUGCUUGGCAAUUAAUUCGAGCAUCAG-CGCGGUAAU ....(((((.((((.((((((.(((((((((((...)))......(((((......)))))...)))))))).))))))))))......((....)-))))))... ( -42.50, z-score = -1.56, R) >droSec1.super_4 5576469 97 - 6179234 ACUGGCCGCAUAAUGUGGCAACCGAGCUGCCGGAAU--------CCGGCGUUUGUUUGCCGUUUGCGGCUUGGUUGGCAAUUAAUUCGAGCAUCAG-CGCGGUUAU ..(((((((.((((.((.((((((((((((....(.--------.(((((......)))))..))))))))))))).))))))......((....)-)))))))). ( -43.00, z-score = -2.75, R) >droSim1.chr3R 26393482 97 - 27517382 AAUAGCCGCAUAAUGUGGCAACCGAGCUGCCGGAAU--------CCGGCGUUUGUUUGCCGUUUGCGGCUUGGCUGGCAAUUAAUUCGAACAUCAG-CGCGGUAAU ....(((((.....))))).((((.((((((((...--------)))))((..(((.((((....))))..)))..))................))-).))))... ( -38.00, z-score = -1.72, R) >consensus AAUGGCCGCAUAAUGUGGCAACCGAGCUGCCGGAAU________CCGGCGUUUGUUUGCCGUUUGCGGCUUGGUUGGCAAUUAAUUCGAGCAUCAG_CGCGGUAAU ...(((((((.....((((((.(((((.(((((...........)))))))))).))))))..))))))).................................... (-27.79 = -27.10 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:36 2011